Team:BYU Provo/Project

From 2013.igem.org

(Difference between revisions)
(Prototype team page)
 
(34 intermediate revisions not shown)
Line 1: Line 1:
-
<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
+
{{TeamBYUProvo}}
-
<html>
+
[[File:BYUProjectPicture.JPG|center|965px|link=Team:BYU_Provo/Project/ExperimentalDesign]]
-
<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #000; background-color: #fe2b33;">
+
-
<div id="template" style="text-align: center; font-weight: bold; font-size: large; color: #f6f6f6; padding: 5px;">
+
-
This is a template page. READ THESE INSTRUCTIONS.
+
-
</div>
+
-
<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; color: #f6f6f6; padding: 5px;">
+
-
You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2008.igem.org/Help:Template/Examples">HERE</a>.
+
-
</div>
+
-
<div id="warning" style="text-align: center; font-weight: bold; font-size: small; color: #f6f6f6; padding: 5px;">
+
-
You <strong>MUST</strong> have all of the pages listed in the menu below with the names specified.  PLEASE keep all of your pages within your teams namespace. 
+
-
</div>
+
-
</div>
+
-
</html>
+
-
<!-- *** End of the alert box *** -->
+
<br>
 +
{| width="100%" style="text-align: top;"
-
{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
+
|- valign="top"
-
!align="center"|[[Team:BYU_Provo|Home]]
+
| style="width: 75%; background-color: transparent;"|
-
!align="center"|[[Team:BYU_Provo/Team|Team]]
+
-
!align="center"|[https://igem.org/Team.cgi?year=2013&team_name=BYU_Provo Official Team Profile]
+
-
!align="center"|[[Team:BYU_Provo/Project|Project]]
+
-
!align="center"|[[Team:BYU_Provo/Parts|Parts Submitted to the Registry]]
+
-
!align="center"|[[Team:BYU_Provo/Modeling|Modeling]]
+
-
!align="center"|[[Team:BYU_Provo/Notebook|Notebook]]
+
-
!align="center"|[[Team:BYU_Provo/Safety|Safety]]
+
-
!align="center"|[[Team:BYU_Provo/Attributions|Attributions]]
+
-
|}
+
 +
<font color="#333399" size="5" font face="Calibri"> '''Project Description''' </font>
 +
<br>
 +
<font color="#333399" size="3" font face="Calibri"> 
-
== '''Overall project''' ==
+
[[File:BYUProjectMissionStatement.JPG|left|500px|link=]]
-
Tell us more about your projectGive us backgroundUse this is the abstract of your projectBe descriptive but concise (1-2 paragraphs)
+
Bacteriophages are the most abundant organism on the planet (estimated at 10 <sup>31</sup>), yet they are still the most uncharacterizedHistorically, bacteriophages have been used to study basic processes of molecular biologyRecent developments have shown that phages are an untapped resource for future technologyFor example, phages are used in medicine (drug delivery and phage therapy) and nanoparticle technology (flexible batteries). The goal of the 2013 BYU iGEM Team is to expand the usage of phages by providing a library of well-characterized phage and show how phages can be used to address cholera, a world problem.
 +
<br>
 +
Although a natural library of phages already exists, only a few have been approved by the FDA for human use, such as T4 and T7. This approval process costs upwards of $100 million and limits the application of phages.  Our goal is to create a library of modified T4 and T7 phages with varying capsid sizes through mutagenesis, purification, and selection.  Researchers can choose phages with the appropriate capsid size from this library based on their needs. Such a library expands the useful capacity of these phages, avoiding the full expense of FDA approval for untested phages.
 +
<br>
 +
To demonstrate the utility of phage, we built a phage-based enzyme delivery system to address the worldwide problem of cholera. Cholera affects 3-5 million people around the globe each year, is transmitted through contaminated water sources, and is infectious when surrounded by its biofilm. Most prevention methods require a large infrastructure and current treatments target symptoms rather than the cholera itself. Our goal is to transfer quorum sensing genes from cholera into E. coli, allowing it to detect the presence of cholera. When cholera is detected, E. coli will lyse and release Lambda phages that have biofilm-degrading enzymes attached to their tail fibers.  This will disrupt cholera biofilms in raw sources of water limiting its ability to cause disease.
 +
</font>
 +
| style="width: 25%; background-color: transparent;"|
-
== Project Details==
+
<font color="#333399" font face="Calibri">
 +
: <font size="3"> <center> '''Background''' </center></font>
 +
<font size="2">
 +
: [[Team:BYU_Provo/Project/Background#Bacteriophages|Bacteriophages]]
 +
:: - [[Team:BYU_Provo/Project/Background#Phage_as_an_Organism|Phage as an Organism]]
-
=== Part 2 ===
+
:: - [[Team:BYU_Provo/Project/Background#Traditional_Use_of_Phage|Traditional Use of Phage]]
 +
:: - [[Team:BYU_Provo/Project/Background#Emerging_Use_of_Phage|Emerging use of phage]]
 +
: [[Team:BYU_Provo/Project/Background#Cholera|Cholera]]
 +
:: - [[Team:BYU_Provo/Project/Background#Cholera,_the_Disease|Cholera, the Disease]]
 +
:: - [[Team:BYU_Provo/Project/Background#Quorum_Sensing|Quorum Sensing]]
-
=== The Experiments ===
+
:: - [[Team:BYU_Provo/Project/Background#Biofilm|Biofilm]]
 +
</font>
 +
<br>
 +
: <font size="3"> <center> '''Project Design''' </center></font>
-
=== Part 3 ===
+
<font size="2">
 +
: [[Team:BYU_Provo/Project/ExperimentalDesign#Phage_Team|Phage Team]]
 +
:: - [[Team:BYU_Provo/Project/ExperimentalDesign#Phage_Team|Experimental Design]]
 +
 +
:: - [[Team:BYU_Provo/Notebook#Phage_Team|Notebooks]]
 +
 +
: [[Team:BYU_Provo/Project/ExperimentalDesign#Cholera_Team|Cholera Team]]
 +
 +
:: - [[Team:BYU_Provo/Project/ExperimentalDesign#Cholera_Team|Experimental Design]]
 +
 +
:: - [[Team:BYU_Provo/Notebook#Cholera_Team|Notebooks]]
 +
 +
</font>
 +
 +
<br>
 +
 +
: <font size="3"> <center> '''Results''' </center></font>
 +
 +
<font size="2">
 +
 +
: [[Team:BYU_Provo/Results/Judge|Judging Criteria]]
 +
 +
: [[Team:BYU_Provo/Results/Experimental|Experimental results]]
 +
 +
: [[Team:BYU_Provo/Results/Modeling|Modeling results]]
 +
 +
: [[Team:BYU_Provo/Parts|Parts submitted to the registry]]
 +
 +
</font>
 +
 +
<br>
 +
 +
: <font size="3"> <center> '''Miscellaneous''' </center></font>
 +
 +
<font size="2">
 +
 +
: [[Team:BYU_Provo/Attribution|Attributions]]
 +
 +
: [[Team:BYU_Provo/Collaboration|Collaborations]]
 +
 +
: [[Team:BYU_Provo/Safety|Safety]]
 +
 +
</font>
 +
 +
</font>
 +
 +
 +
|}
-
== Results ==
+
{{TeamBYUProvoFooter}}

Latest revision as of 03:21, 28 September 2013

BYUProjectPicture.JPG


Project Description


BYUProjectMissionStatement.JPG

Bacteriophages are the most abundant organism on the planet (estimated at 10 31), yet they are still the most uncharacterized. Historically, bacteriophages have been used to study basic processes of molecular biology. Recent developments have shown that phages are an untapped resource for future technology. For example, phages are used in medicine (drug delivery and phage therapy) and nanoparticle technology (flexible batteries). The goal of the 2013 BYU iGEM Team is to expand the usage of phages by providing a library of well-characterized phage and show how phages can be used to address cholera, a world problem.


Although a natural library of phages already exists, only a few have been approved by the FDA for human use, such as T4 and T7. This approval process costs upwards of $100 million and limits the application of phages. Our goal is to create a library of modified T4 and T7 phages with varying capsid sizes through mutagenesis, purification, and selection. Researchers can choose phages with the appropriate capsid size from this library based on their needs. Such a library expands the useful capacity of these phages, avoiding the full expense of FDA approval for untested phages.


To demonstrate the utility of phage, we built a phage-based enzyme delivery system to address the worldwide problem of cholera. Cholera affects 3-5 million people around the globe each year, is transmitted through contaminated water sources, and is infectious when surrounded by its biofilm. Most prevention methods require a large infrastructure and current treatments target symptoms rather than the cholera itself. Our goal is to transfer quorum sensing genes from cholera into E. coli, allowing it to detect the presence of cholera. When cholera is detected, E. coli will lyse and release Lambda phages that have biofilm-degrading enzymes attached to their tail fibers. This will disrupt cholera biofilms in raw sources of water limiting its ability to cause disease.

Background

Bacteriophages
- Phage as an Organism
- Traditional Use of Phage
- Emerging use of phage
Cholera
- Cholera, the Disease
- Quorum Sensing
- Biofilm


Project Design

Phage Team
- Experimental Design
- Notebooks
Cholera Team
- Experimental Design
- Notebooks


Results

Judging Criteria
Experimental results
Modeling results
Parts submitted to the registry


Miscellaneous

Attributions
Collaborations
Safety