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Team:HokkaidoU Japan/RBS/Methods
From 2013.igem.org
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| - | <h1 id="common-header-title">Maestro E.coli</h1> | + | <h1 id="common-header-title">Maestro <span class="italic">E. coli</span></h1> |
<h2 id="common-header-subtitle">RBS</h2> | <h2 id="common-header-subtitle">RBS</h2> | ||
<img id="common-header-img" src="https://static.igem.org/mediawiki/2013/e/ea/HokkaidoU2013_Maestro_Header.png"> | <img id="common-header-img" src="https://static.igem.org/mediawiki/2013/e/ea/HokkaidoU2013_Maestro_Header.png"> | ||
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We constructed new RBS family, SD2, SD4, SD6, SD8. | We constructed new RBS family, SD2, SD4, SD6, SD8. | ||
| - | These RBSs have | + | These RBSs have enhancer sequence (GCTCTTTAACAATTTATCA) and SD sequence (SD2:GG, SD4:GAGG, SD6:AGGAGG, SD8:TAAGGAGG). |
We constructed SD8 from synthetic oligos (forward:SD8-f, reverse:SD8-r). | We constructed SD8 from synthetic oligos (forward:SD8-f, reverse:SD8-r). | ||
We constructed SD2, SD4, SD6 by PCR (forward:EX-f, reverse:SD2-r, SD4-r, SD6-r, template:SD8). | We constructed SD2, SD4, SD6 by PCR (forward:EX-f, reverse:SD2-r, SD4-r, SD6-r, template:SD8). | ||
</p> | </p> | ||
| - | <div class="fig800"> | + | <div class="fig fig800"> |
<img src="https://static.igem.org/mediawiki/2013/a/ab/HokkaidoU_RBS_methods1_800.png"> | <img src="https://static.igem.org/mediawiki/2013/a/ab/HokkaidoU_RBS_methods1_800.png"> | ||
| - | <div> | + | <div><span class="bold">fig.1: oligos.</span> RED: enhancer sequence, BLUE: SD sequence.</div> |
</div> | </div> | ||
| - | <div class="fig400 para"> | + | <div class="fig fig400 para"> |
<img src="https://static.igem.org/mediawiki/2013/9/9e/HokkaidoU_RBS_methods2_400.png"> | <img src="https://static.igem.org/mediawiki/2013/9/9e/HokkaidoU_RBS_methods2_400.png"> | ||
| - | <div> | + | <div><span class="bold">fig.2: RBS construction.</span></div> |
</div> | </div> | ||
| - | <div class="fig400 para"> | + | <div class="fig fig400 para"> |
| - | <img src="https://static.igem.org/mediawiki/2013/ | + | <img src="https://static.igem.org/mediawiki/2013/1/1a/HokkaidoU2013_RBS_methods3revision_400.png"> |
| - | <div> | + | <div><span class="bold">fig.3: our parts.</span></div> |
</div> | </div> | ||
| + | <div class="clearfix"></div> | ||
<h2>Assay</h2> | <h2>Assay</h2> | ||
<p> | <p> | ||
| - | We ligated TetR repressible promoter ( | + | We ligated TetR repressible promoter (pTet), each of the new RBSs', LacZα and double terminator. |
| - | Using this construct we performed | + | Using this construct we performed β-Galactosidase assay. |
</p> | </p> | ||
| + | <div id="prev-page"> | ||
| + | <a href="https://2013.igem.org/Team:HokkaidoU_Japan/RBS"><div class="arrow-div"></div><span>RBS Top</span></a> | ||
| + | </div> | ||
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| + | <div id="next-page"> | ||
| + | <a href="https://2013.igem.org/Team:HokkaidoU_Japan/RBS/Results"><div class="arrow-div"></div><span>Results</span></a> | ||
| + | </div> | ||
Latest revision as of 02:52, 29 October 2013
Maestro E. coli
RBS
RBS family parts
We constructed new RBS family, SD2, SD4, SD6, SD8. These RBSs have enhancer sequence (GCTCTTTAACAATTTATCA) and SD sequence (SD2:GG, SD4:GAGG, SD6:AGGAGG, SD8:TAAGGAGG). We constructed SD8 from synthetic oligos (forward:SD8-f, reverse:SD8-r). We constructed SD2, SD4, SD6 by PCR (forward:EX-f, reverse:SD2-r, SD4-r, SD6-r, template:SD8).
fig.1: oligos. RED: enhancer sequence, BLUE: SD sequence.
fig.2: RBS construction.
fig.3: our parts.
Assay
We ligated TetR repressible promoter (pTet), each of the new RBSs', LacZα and double terminator. Using this construct we performed β-Galactosidase assay.
