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Team:HokkaidoU Japan/Notebook/Promoter RandomPromtoer-B0034-mRFP1-B0015
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| - | <h2> | + | <h2>RandomPromtoer-B0034-mRFP1-B0015</h2> |
<div class="workflow-container"> | <div class="workflow-container"> | ||
<ul class="steps"> | <ul class="steps"> | ||
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<div class="step-tile"><h2>Start</h2></div> | <div class="step-tile"><h2>Start</h2></div> | ||
</li> | </li> | ||
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">PCR</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Tue Jun 11</time> </li> </ul> <div class="step-recipe"> B0034-mRFP1-B0015<br> 100up, 200dn, KOD Plus Neo </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Get K1084007 from stock</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Tue Jun 11</time> </li> </ul> <div class="step-recipe"> </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">PCR purification</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Wed Jun 12</time> </li> </ul> <div class="step-recipe"> B0034-mRFP1-B0015 </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Digestion</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Wed Jun 12</time> </li> </ul> <div class="step-recipe"> Cut K1084007 with SpeI, PstI (using 10×H buffer)<br> Cut B0034-mRFP1-B0015 with XbaI, PstI (using 10×M buffer) </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Ligation</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Thu Jun 13</time> </li> </ul> <div class="step-recipe"> Ligate K1084007 with B0034-mRFP1-B0015 </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Transformation</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Thu Jun 13</time> </li> </ul> <div class="step-recipe"> K1084007-B0034-mRFP1-B0015<br> 1µL DNA to DH5α </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Colony PCR</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Mon Jun 17</time> </li> </ul> <div class="step-recipe"> K1084007-B0034-mRFP1-B0015 </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">PCR</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Tue Jun 18 and Wed Jun 19</time> </li> </ul> <div class="step-recipe"> K1084007(colony)<br> ranori-f, 200dn, KOD FX Neo<br> We got random promter.<br><br> B0034-LacZα-B0015(colony)<br> 100up, 200dn, KOD FX Neo </div> </div> </div> </li> |
| - | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Digestion</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Thu Jun 20</time> </li> </ul> <div class="step-recipe"> Cut random promoter with PstI, SpeI (using 10×H buffer)<br> Cut B0034-LacZα-B0015 with XbaI, PstI (using 10×M buffer) </div> </div> </div> </li> | |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Ligation</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Thu Jun 20</time> </li> </ul> <div class="step-recipe"> Ligate random promoter with B0034-LacZα-B0015 </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Transformation</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Thu Jun 20</time> </li> </ul> <div class="step-recipe"> 1µL DNA to JM109<br> to X-Gal plate </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Culture</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Fri Jun 21</time> </li> </ul> <div class="step-recipe"> random promoter-B0034-LacZα-B0015<br> to X-Gal 50mg/mL, X-Gal 5mg/mL and LBC<br> We got some blue colonies with different levels of blue. </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Culture</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Sat Jun 22</time> </li> </ul> <div class="step-recipe"> random promoter-B0034-LacZα-B0015 ×10 samples<br> random promoter-B0034-mRFP1-B0015 ×9 samples<br> K1084007-B0034-mRFP1-B0015 </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Mini-prep</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Sun Jun 23</time> </li> </ul> <div class="step-recipe"> random promoter-B0034-LacZα-B0015 ×10 samples<br> random promoter-B0034-mRFP1-B0015 ×9 samples<br> K1084007-B0034-mRFP1-B0015 </div> </div> </div> </li> |
| - | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Culture</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Wed Jun 26</time> </li> </ul> <div class="step-recipe"> random promoter-B0034-mRFP1-B0015<br> K1084007-B0034-mRFP1-B0015<br> random promoter-B0034-mRFP1-B0015 ×20 samples </div> </div> </div> </li> | |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">PCR</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Thu Jun 27</time> </li> </ul> <div class="step-recipe"> random promoter-B0034-mRFP1-B0015 ×2 samples<br> random promoter-B0034-LacZα-B0015 ×2 samples<br> 100up, 200dn, KOD FX Neo </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">PCR</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Fri Jun 28</time> </li> </ul> <div class="step-recipe"> J23112, J23103, J23117, J23106, J23111, J23100<br> 100up, 200dn, KOD FX Neo </div> </div> </div> </li> |
| - | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Digestion</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Fri Jun 28</time> </li> </ul> <div class="step-recipe"> Cut (J23112, J23103, J23117, J23106, J23111, J23100) with EcoRI, PstI (using 10×H buffer)<br> Cut B0034-mRFP1-B0015 with EcoRI, PstI (using 10×H buffer) </div> </div> </div> </li> | |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Antarctic phophatase</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Fri Jun 28</time> </li> </ul> <div class="step-recipe"> B0034-mRFP1-B0015 </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Ligation</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Sat Jun 29</time> </li> </ul> <div class="step-recipe"> Ligate (J23112, J23103, J23117, J23106, J23111, J23100) with B0034-mRFP1-B0015 </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Transformation</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Sat Jun 29 and Fri Jul 5</time> </li> </ul> <div class="step-recipe"> (J23112, J23103, J23117, J23106, J23111, J23100)-B0034-mRFP1-B0015<br> 1µL DNA to JM109<br> pre culture </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Culture</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Mon Jul 1</time> </li> </ul> <div class="step-recipe"> (J23112, J23103, J23117, J23106, J23111, J23100) with B0034-mRFP1-B0015<br> We picked up some colonies to a X-Gal LBC plate. We confirmed that colonies were white. </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Transformation</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Sat Jul 6</time> </li> </ul> <div class="step-recipe"> R0040-B0034-mRFP1-B0015 </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Culture</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Mon Jul 8</time> </li> </ul> <div class="step-recipe"> (J23112, J23103, J23117, J23106, J23111, J23100, R0040, R0010)-B0034-mRFP1-B0015 </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Transformation</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Thu Jul 11</time> </li> </ul> <div class="step-recipe"> random promoter-B0034-mRFP1-B0015<br> 1µL DNA to JM109 to X-Gal plate </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">PCR & PCR purification</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Mon Jul 15</time> </li> </ul> <div class="step-recipe"> J23112, J23103, J23117(colony)<br> 100up, 200dn, KOD FX Neo </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Digestion</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Mon Jul 15</time> </li> </ul> <div class="step-recipe"> Cut J23112, J23103, J23117 with EcoRI, PstI (using 10×H buffer)<br> Cut random promoter-B0034-LacZα-B0015 on pSB1C3 with EcoRI, PstI (using 10×M buffer) </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Antarctic phosphatase</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Tue Jul 16</time> </li> </ul> <div class="step-recipe"> pSB1C3 </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Ligation</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Tue Jul 16</time> </li> </ul> <div class="step-recipe"> Ligate (J23112, J23103, J23117) with pSB1C3 </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Transformation</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Tue Jul 16 and Fri Jul 19</time> </li> </ul> <div class="step-recipe"> 1µL DNA to JM109 to 10 X-Gal plates </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Culture</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Fri Jul 26</time> </li> </ul> <div class="step-recipe"> We cultured some colonies from Jul 19 and 23 plates to X-Gal plate. </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Assay</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Wed Aug 7</time> </li> </ul> <div class="step-recipe"> Assay for RFP expression </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Culture</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Thu Aug 8, Fri Aug 9 and Sat Aug 10</time> </li> </ul> <div class="step-recipe"> random promoter-B0034-mRFP1-B0015 </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Mini-prep</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Sat Aug 10</time> </li> </ul> <div class="step-recipe"> random promoter-B0034-mRFP1-B0015(cultured Aug 8) </div> </div> </div> </li> |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title">Culture | + | |
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title"> | + | |
| - | + | ||
<li class="step complete"> | <li class="step complete"> | ||
<div class="step-tile"><h2>Complete!</h2></div> | <div class="step-tile"><h2>Complete!</h2></div> | ||
Latest revision as of 06:57, 27 September 2013
Maestro E.coli
Notebook
RandomPromtoer-B0034-mRFP1-B0015
-
Start
-
PCR
B0034-mRFP1-B0015
100up, 200dn, KOD Plus Neo -
Get K1084007 from stock
-
PCR purification
B0034-mRFP1-B0015 -
Digestion
Cut K1084007 with SpeI, PstI (using 10×H buffer)
Cut B0034-mRFP1-B0015 with XbaI, PstI (using 10×M buffer) -
Ligation
Ligate K1084007 with B0034-mRFP1-B0015 -
Transformation
K1084007-B0034-mRFP1-B0015
1µL DNA to DH5α -
Colony PCR
K1084007-B0034-mRFP1-B0015 -
PCR
K1084007(colony)
ranori-f, 200dn, KOD FX Neo
We got random promter.
B0034-LacZα-B0015(colony)
100up, 200dn, KOD FX Neo -
Digestion
Cut random promoter with PstI, SpeI (using 10×H buffer)
Cut B0034-LacZα-B0015 with XbaI, PstI (using 10×M buffer) -
Ligation
Ligate random promoter with B0034-LacZα-B0015 -
Transformation
1µL DNA to JM109
to X-Gal plate -
Culture
random promoter-B0034-LacZα-B0015
to X-Gal 50mg/mL, X-Gal 5mg/mL and LBC
We got some blue colonies with different levels of blue. -
Culture
random promoter-B0034-LacZα-B0015 ×10 samples
random promoter-B0034-mRFP1-B0015 ×9 samples
K1084007-B0034-mRFP1-B0015 -
Mini-prep
random promoter-B0034-LacZα-B0015 ×10 samples
random promoter-B0034-mRFP1-B0015 ×9 samples
K1084007-B0034-mRFP1-B0015 -
Culture
random promoter-B0034-mRFP1-B0015
K1084007-B0034-mRFP1-B0015
random promoter-B0034-mRFP1-B0015 ×20 samples -
PCR
random promoter-B0034-mRFP1-B0015 ×2 samples
random promoter-B0034-LacZα-B0015 ×2 samples
100up, 200dn, KOD FX Neo -
PCR
J23112, J23103, J23117, J23106, J23111, J23100
100up, 200dn, KOD FX Neo -
Digestion
Cut (J23112, J23103, J23117, J23106, J23111, J23100) with EcoRI, PstI (using 10×H buffer)
Cut B0034-mRFP1-B0015 with EcoRI, PstI (using 10×H buffer) -
Antarctic phophatase
B0034-mRFP1-B0015 -
Ligation
Ligate (J23112, J23103, J23117, J23106, J23111, J23100) with B0034-mRFP1-B0015 -
Transformation
(J23112, J23103, J23117, J23106, J23111, J23100)-B0034-mRFP1-B0015
1µL DNA to JM109
pre culture -
Culture
(J23112, J23103, J23117, J23106, J23111, J23100) with B0034-mRFP1-B0015
We picked up some colonies to a X-Gal LBC plate. We confirmed that colonies were white. -
Transformation
R0040-B0034-mRFP1-B0015 -
Culture
(J23112, J23103, J23117, J23106, J23111, J23100, R0040, R0010)-B0034-mRFP1-B0015 -
Transformation
random promoter-B0034-mRFP1-B0015
1µL DNA to JM109 to X-Gal plate -
PCR & PCR purification
J23112, J23103, J23117(colony)
100up, 200dn, KOD FX Neo -
Digestion
Cut J23112, J23103, J23117 with EcoRI, PstI (using 10×H buffer)
Cut random promoter-B0034-LacZα-B0015 on pSB1C3 with EcoRI, PstI (using 10×M buffer) -
Antarctic phosphatase
pSB1C3 -
Ligation
Ligate (J23112, J23103, J23117) with pSB1C3 -
Transformation
1µL DNA to JM109 to 10 X-Gal plates -
Culture
We cultured some colonies from Jul 19 and 23 plates to X-Gal plate. -
Assay
Assay for RFP expression -
Culture
random promoter-B0034-mRFP1-B0015 -
Mini-prep
random promoter-B0034-mRFP1-B0015(cultured Aug 8) -
Complete!
