Team:Chiba/Assay/uptake

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Latest revision as of 03:08, 28 September 2013

iGEM-2013 Chiba

Uptake Assay

Expreriment:

BL21 strains introduced plasmids shown in Fig.1 and Fig. 2 were cultured in the presence of arabinose and aTc. After induction of ferritin and fur and fieF knockdown, these strain were cultured in the presence of ferric citrate. We measure concentration of iron remaining in medium(Fig. 3).

Experiment:

Fig. 2

E. coli stains BL21 and SHuffle® were transformed by Plasmid shown in Fig. 1 and Fig. 2. Then we cultured all transformants with arabinose and aTc. Arabinose and aTc were added to express ferritin or to knock down fur and fieF. After that we cultured it in the presence of ferric citrate, and measured the density of iron that weren't taken in to E. coli and remained in the culture by measuring Absorbance (Abs 756) with color reagent(Fig. 3).

Detailed procedure

1.E. coli strains BL21 and SHuffle® were transformed with the plasmids shown in Fig. 1 and Fig.2.
2.All transformants were inoculated into culture(100 mL TB medium) and was shaken for 12h (at 37ºC).
3.We centrifuged samples with 3,750 rpm, at 4ºC for 25 minutes and resuspended with 5 mL LB medium.
4.We added L-arabinose into each sample (final conc. 0.2%). Then cultured for another 9 hours (at 37ºC).
5.We diluted samples by LB medium and got 500 uL of the diluted cell suspension. Approximately, 2×10⁹, 10⁹, 5×10⁸ cells were contained in it.
6.We added 5 uL from 10 mM iron citrate(III) and 5uL from 10 mM iron ascorbate(II) to the sample, and we shake the sample for 1h (at 37ºC) to charge iron inside E.coli.
7.We centrifuged the sample with 19,600 rpm, at 37ºC for 1 minutes and got supernatant(60 mL).
8.We added color reagent, Tris buffer solution, Reducing Agent to the sample and measured absorbance (Abs756) to determine the density of iron.

@@ Line 15: / Line 15: @@
-<h2>uptake実験方法</h2>
+<h2>Uptake Assay</h2>
 <p>
+<br><b>Expreriment:</b><br>
+<br>&nbsp;&nbsp;&nbsp;&nbsp;BL21 strains introduced plasmids shown in Fig.1 and Fig. 2 were cultured in the presence of arabinose and aTc. After induction of ferritin and <i>fur</i> and <i>fie</i>F knockdown, these strain were cultured in the presence of ferric citrate. We measure  concentration of iron remaining in medium(Fig. 3).
-<br><b>Expreriment:</b><br>
-<br>Fig.1,Fig.2に示すプラスミドでそれぞれ形質転換したBL21株について、アラビノースおよびatC存在下で培養し、それぞれフェリチンの発現またはfur, fieFのノックダウンを誘導した後、クエン酸鉄存在下で培養し、呈色試薬による吸光度(Abs756)から大腸菌に取り込まれず培養液中に残存した鉄の濃度を測定した(Fig.3)。
 <br><br>
@@ Line 26: / Line 27: @@
 <left><img src="https://static.igem.org/mediawiki/2013/3/3f/CRISPRi.PNG" width="409px"height="88px"></left>
 <right><img src="https://static.igem.org/mediawiki/2013/2/23/DCas9.PNG" width="306px"height="110px"></right><br>
-<center>fig. 1</center>
+<center>Fig. 2</center>
-<br>&nbsp;&nbsp;&nbsp;&nbsp;E. coli stain BL21 were transformed by Plasmid shown in Fig. 1 and Fig. 2.&nbsp;Then we cultured all transformants with arabinose and atC.&nbsp; Arabinose and atC were added to express ferritin or to knock down fur and fieF.&nbsp; After that we cultured it in the presence of ferric citrate, and measured the density of iron that weren’t taken in to E. coli and remained in the culture by measuring Absorbance (Abs 756) with color reagent(Fig. 3).
+<br><p>&nbsp;&nbsp;&nbsp;&nbsp;<i>E. coli</i> stains BL21 and <a href="http://www.nebj.jp/products/detail/113">SHuffle®</a> were transformed by Plasmid shown in Fig. 1 and Fig. 2.&nbsp;Then we cultured all transformants with arabinose and aTc.&nbsp; Arabinose and aTc were added to express ferritin or to knock down <i>fur</i> and <i>fie</i>F.&nbsp; After that we cultured it in the presence of ferric citrate, and measured the density of iron that weren't taken in to <i>E. coli</i> and remained in the culture by measuring Absorbance (Abs 756) with color reagent(Fig. 3).</p>
+<p>
-<br><br><br><br><b>Detailed procedure</b>
+<br><br><br><br><b>Detailed procedure</b></p>
-<br>
+<p>1.<i>E. coli</i> strains BL21 and <a href="http://www.nebj.jp/products/detail/113">SHuffle®</a> were transformed with the plasmids shown in Fig. 1 and Fig.2.<br>
-.E.coli strain BL21 were transformed with the plasmids shown in Fig. 1 and Fig.2.<br>
+.All transformants were inoculated into culture(100 mL TB medium) and was shaken for 12h (at 37ºC).<br>
-.All transformants were inoculated into culture(100 mL TB medium) and was shaken for 12h (at 37℃).<br>
+.We centrifuged samples with 3,750 rpm, at 4ºC for 25 minutes and resuspended with 5 mL LB medium.<br>
-.We centrifuged samples with 3,750 rpm, at 4℃ for 25 minutes and resuspended with 5 mL LB medium.<br>
+.We added L-arabinose into each sample (final conc. 0.2%). Then cultured for another 9 hours (at 37ºC).<br>
-.We added L-arabinose into each sample (final conc. 0.2%). Then cultured for another 9 hours (at 37℃).<br>
+.We diluted samples by LB medium and got 500 uL of the diluted cell suspension. Approximately, 2×10<sup>9</sup>, 10<sup>9</sup>, 5×10<sup>8</sup> cells were contained in it.<br>
-.We diluted samples by LB medium and got 500 uL of the diluted cell suspension. Approximately, 2×10^9, 10^9, 5×10^8 cells were contained in it.<br>
+.We added 5 uL from 10 mM iron citrate(III) and 5uL from 10 mM iron ascorbate(II) to the sample, and we shake the sample for 1h (at 37ºC) to charge iron inside E.coli.<br>
-.We added 5 uL from 10 mM iron citrate(Ⅲ) and 5uL from 10 mM iron ascorbate(Ⅱ) to the sample, and we shake the sample for 1h (at 37℃) to charge iron inside E.coli.<br>
+.We centrifuged the sample with 19,600 rpm, at 37ºC for 1 minutes and got supernatant(60 mL).<br>
-.We centrifuged the sample with 19,600 rpm, at 37℃ for 1 minutes and got supernatant(60 mL).<br>
 .We added color reagent, Tris buffer solution, Reducing Agent to the sample and measured absorbance (Abs756) to determine the density of iron.<br>
-絵とかあるといいよね！！
 </p>