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Team:SDU-Denmark/Tour41
From 2013.igem.org
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| - | </div> | + | <div class="accordionTitel">Major events</div> |
| + | <div class="pane" style="height:520px;" > | ||
| - | + | <p> | |
| - | + | <b>February</b><br> | |
| - | + | 28.02.2013 - Assembly of the team | |
| - | <b>April</b><br> | + | </p><p> |
| + | <b>March</b> | ||
| + | 08.03.2013 - 10.03.2013 - Teambuilding: iGEM crash course (DTU)<br> | ||
| + | 21.03.2013 - First meeting: get to know each other <br> | ||
| + | </p><p> | ||
| + | <b>April - Brainstorming</b><br> | ||
29.04.2013 - Social dinner and introduction to wiki design <br> | 29.04.2013 - Social dinner and introduction to wiki design <br> | ||
| + | </p><p> | ||
| + | <b>May - Brainstorming</b><br> | ||
| + | 08.05.2013 - A consensus was reached: Bacteriorganic Rubber<br> | ||
| + | </p><p> | ||
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<b>July</b><br> | <b>July</b><br> | ||
11.07.2013 - Barbeque dinner <br> | 11.07.2013 - Barbeque dinner <br> | ||
17.07.2013 - Tour des chambres <br> | 17.07.2013 - Tour des chambres <br> | ||
| + | </p><p> | ||
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<b>August</b><br> | <b>August</b><br> | ||
08.08.2013 - Squash tournament <br> | 08.08.2013 - Squash tournament <br> | ||
22.08.2013 - Cabaret show, HCA festival 2013 <br> | 22.08.2013 - Cabaret show, HCA festival 2013 <br> | ||
31.08.2013 - 01.09.2013 - DK meetup <br> | 31.08.2013 - 01.09.2013 - DK meetup <br> | ||
| + | </p><p> | ||
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<b>September</b><br> | <b>September</b><br> | ||
04.09.2013 - Supervisor Ann makes dinner for responsibility delegation meeting <br> | 04.09.2013 - Supervisor Ann makes dinner for responsibility delegation meeting <br> | ||
25.09.2013 - Dinner after status meeting <br> | 25.09.2013 - Dinner after status meeting <br> | ||
26.09.2013 - Dinner with previous SDU iGEM teams <br> | 26.09.2013 - Dinner with previous SDU iGEM teams <br> | ||
| + | </p><p> | ||
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<b>October</b><br> | <b>October</b><br> | ||
03.10.2013 - Late-night pizza<br> | 03.10.2013 - Late-night pizza<br> | ||
| + | </p> | ||
</div> | </div> | ||
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<div class="accordionTitel">Lab successes</div> | <div class="accordionTitel">Lab successes</div> | ||
| - | <div class="pane" style="height: | + | <div class="pane" style="height:730px;" > |
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| + | <p> | ||
<b>July</b><br> | <b>July</b><br> | ||
| - | 21.07.2013 - pSB1C3-Pcon-dxs(B. subtilis)-amilCP <br> | + | 21.07.2013 - pSB1C3-Pcon-<span class="specialWord">dxs (B. subtilis)</span>-amilCP <br> |
| - | 25.07.2013 - B. | + | 25.07.2013 - <span class="specialWord">B. subtilis</span> DXS biobrick <br> |
| - | 25.07.2013 - E.coli IspG biobrick <br> | + | 25.07.2013 - <span class="specialWord">E. coli</span> IspG biobrick <br> |
| - | 29.07.2013 - pSB1C3-Plac-dxs(B. | + | 29.07.2013 - pSB1C3-Plac-<span class="specialWord">dxs (B. subtilis)</span>-linker-GFP <br> |
| - | 31.07.2013 - pSB1C3-Plac-dxs(E. coli)-linker-GFP <br> | + | 31.07.2013 - pSB1C3-Plac-<span class="specialWord">dxs (E. coli)</span>-linker-GFP <br> |
| + | </p><p> | ||
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<b>August</b><br> | <b>August</b><br> | ||
01.08.2013 - We realized LacI should be overexpressed in order to get repression of the lac promoter<br> | 01.08.2013 - We realized LacI should be overexpressed in order to get repression of the lac promoter<br> | ||
| - | 01.08.2013 - Sequencing of E. coli dxs standard part <br> | + | 01.08.2013 - Sequencing of <span class="specialWord">E. coli dxs</span> standard part <br> |
| - | 05.08.2013 - pSB1C3-Plac-dxs(B. | + | 05.08.2013 - pSB1C3-Plac-<span class="specialWord">dxs (B. subtilis)</span> <br> |
19.08.2013 - HRT2 biobrick <br> | 19.08.2013 - HRT2 biobrick <br> | ||
| - | 19.08.2013 - pSB1C3-Plac-dxs(E. coli) <br> | + | 19.08.2013 - pSB1C3-Plac-<span class="specialWord">dxs (E. coli)</span> <br> |
| - | 19.08.2013 - pSB1C3-Pcon-lacI:LVA-term<br> | + | 19.08.2013 - pSB1C3-Pcon-<span class="specialWord">lacI:LVA</span>-term<br> |
17.09.2013 - LacI BioBrick<br> | 17.09.2013 - LacI BioBrick<br> | ||
| - | 17.08.2013 - pSB1C3-Pcon-araC-term <br> | + | 17.08.2013 - pSB1C3-Pcon-<span class="specialWord">araC</span>-term <br> |
| - | 21.08.2013 - pSB1C3-lacI:LVA-Plac-dxs(B. | + | 21.08.2013 - pSB1C3-lacI:LVA-Plac-<span class="specialWord">dxs (B. subtilis)</span> <br> |
| - | 23.08.2013 - pSB1C3-lacI:LVA-Plac-dxs(B. | + | 23.08.2013 - pSB1C3-lacI:LVA-Plac-<span class="specialWord">dxs (B. subtilis)</span>-linker-GFP <br> |
| - | 24.08.2013 - Characterization of | + | 24.08.2013 - Characterization of LacI:LVA function <br> |
| - | 24.08.2013 - Confirmation that we could control the expression of Dxs with | + | 24.08.2013 - Confirmation that we could control the expression of Dxs with LacI:LVA using IPTG <br> |
| - | 28.08.2013 - pSB1C3-lacI:LVA-Plac-dxs(E. coli) <br> | + | 28.08.2013 - pSB1C3-lacI:LVA-Plac-<span class="specialWord">dxs (E. coli)</span> <br> |
| - | 30.08.2013 - pSB1C3-Para-HRT2-(FLAG)<br> | + | 30.08.2013 - pSB1C3-Para-<span class="specialWord">HRT2</span>-(FLAG)<br> |
| - | 30.08.2013 - Growth experiment for MG1655/pSB1C3-lacI:LVA-Plac-dxs(B. | + | 30.08.2013 - Growth experiment for MG1655/pSB1C3-<span class="specialWord">lacI:LVA</span>-Plac-<span class="specialWord">dxs (B. subtilis)</span>+/-GFP <br> |
| + | </p><p> | ||
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<b>September</b><br> | <b>September</b><br> | ||
| - | 13.09.2013 - pSB1C3-araC-Para-HRT2-(FLAG) <br> | + | 13.09.2013 - pSB1C3-<span class="specialWord">araC</span>-Para-<span class="specialWord">HRT2</span>-(FLAG) <br> |
| - | 17.09.2013 - pSB1C3-lacI-Plac-dxs(B. | + | 17.09.2013 - pSB1C3-<span class="specialWord">lacI</span>-Plac-<span class="specialWord">dxs (B. subtilis)</span>-linker-GFP <br> |
| - | 17.09.2013 - Characterized device with | + | 17.09.2013 - Characterized device with LacI and found that it functions better than LacI:LVA <br> |
| - | 20.09.2013 - Growth experiment for MG1655/pSB1C3-lacI-Plac-dxs(B. | + | 20.09.2013 - Growth experiment for MG1655/pSB1C3-<span class="specialWord">lacI</span>-Plac-<span class="specialWord">dxs (B. subtilis)</span><br> |
21.09.2013 - pSB1K3-araC-Para-HRT2-(FLAG) <br> | 21.09.2013 - pSB1K3-araC-Para-HRT2-(FLAG) <br> | ||
| - | 21.09.2013 - Growth experiment for MG1655/pSB1C3-lacI-Plac-dxs(B. | + | 21.09.2013 - Growth experiment for MG1655/pSB1C3-<span class="specialWord">lacI</span>-Plac-<span class="specialWord">dxs (B. subtilis)</span>-GFP <br> |
| - | 22.09.2013 - pSB1C3-lacI-Plac-dxs(B. | + | 22.09.2013 - pSB1C3-<span class="specialWord">lacI</span>-Plac-<span class="specialWord">dxs (B. subtilis)</span> <br> |
| + | </p><p> | ||
| + | |||
<b>October</b><br> | <b>October</b><br> | ||
| - | 01.10.2013 - Characterization of | + | 01.10.2013 - Characterization of AraC function <br> |
02.10.2013 - Confirmation that we could induce and control the expression of HRT2<br> | 02.10.2013 - Confirmation that we could induce and control the expression of HRT2<br> | ||
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| + | </p> | ||
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<div class="accordionTitel">iGEM deadlines</div> | <div class="accordionTitel">iGEM deadlines</div> | ||
| - | <div class="pane current" style="height: | + | <div class="pane current" style="height:310px;" > |
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| + | <p> | ||
<b>August</b><br> | <b>August</b><br> | ||
09.08.2013 - Team project description due <br> | 09.08.2013 - Team project description due <br> | ||
30.08.2013 - Track selection <br> | 30.08.2013 - Track selection <br> | ||
30.08.2013 - Project title <br> | 30.08.2013 - Project title <br> | ||
| + | </p> | ||
| + | <p> | ||
<b>September</b><br> | <b>September</b><br> | ||
23.09.2013 - BioBricks Part DNA shipped to iGEM HQ <br> | 23.09.2013 - BioBricks Part DNA shipped to iGEM HQ <br> | ||
25.09.2013 - BioBricks Part DNA at the Registry (Received at iGEM) <br> | 25.09.2013 - BioBricks Part DNA at the Registry (Received at iGEM) <br> | ||
| + | </p> | ||
| + | <p> | ||
<b>October</b><br> | <b>October</b><br> | ||
| - | 04.10.2013 - Wiki freeze <br> | + | 04.10.2013 - European Wiki freeze <br> |
| - | 11.10.2013 - 13.10.2013 - Regional Jamboree <br> | + | 11.10.2013 - 13.10.2013 - Regional Jamboree Lyon <br> |
| - | + | 28.10.2013 - World Championship Wiki freeze <br> | |
| + | </p> | ||
| + | <p> | ||
| + | <b>November</b><br> | ||
| + | 01.11.2013 - 05.11.2013 - World Championship Jamboree Boston <br> | ||
| + | </p> | ||
</div> | </div> | ||
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<div class="accordion" style="width:650px;"> | <div class="accordion" style="width:650px;"> | ||
| - | <div class="accordionTitel">Primer design and | + | <div class="accordionTitel">Primer design and Site-Directed Mutagenesis</div> |
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| + | <p> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/8/8a/SDU2013_Protocol_0001.pdf" target="_blank">SDU2013 Protocol 0001 - USER primer design</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/e/e1/SDU2013_Protocol_0002.pdf" target="_blank">SDU2013 Protocol 0002 - Standard primer design</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/8/85/SDU2013_Protocol_0050.pdf" target="_blank">SDU2013 Protocol 0050 - SDM on Plac - <span class="specialWord">dxs (E. coli)</span> </a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/2/2d/SDU2013_Protocol_0051.pdf" target="_blank">SDU2013 Protocol 0051 - SDM on <span class="specialWord">dxs (E. coli)</span> amilCP</a><br> | ||
| + | </p> | ||
</div> | </div> | ||
| - | <div class="accordionTitel"> | + | <div class="accordionTitel">Basic Parts</div> |
<div class="pane" style="height:130px;" > | <div class="pane" style="height:130px;" > | ||
| + | <p> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/5/5e/SDU2013_Protocol_0006part1.pdf" target="_blank">SDU2013 Protocol 0006.1 - Dxs from <span class="specialWord">B. subtilis</span></a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/0/0a/SDU2013_Protocol_0006part2.pdf" target="_blank">SDU2013 Protocol 0006.2 - Dxs from <span class="specialWord">B. subtilis</span></a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/0/01/SDU2013_Protocol_0017.pdf" target="_blank">SDU2013 Protocol 0017 - IspG</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/6/6c/SDU2013_Protocol_0032.pdf" target="_blank">SDU2013 Protocol 0032 - Prenyltransferase</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/4/4c/SDU2013_Protocol_0033.pdf" target="_blank">SDU2013 Protocol 0033 - LacI</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/1/1f/SDU2013_Protocol_0034.pdf" target="_blank">SDU2013 Protocol 0034 - AraC</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d1/SDU2013_Protocol_0037.pdf" target="_blank">SDU2013 Protocol 0037 - LacI and AraC</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d0/SDU2013_Protocol_0039.pdf" target="_blank">SDU2013 Protocol 0039 - LacI without LVA-tag</a><br> | ||
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</div> | </div> | ||
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<div class="accordionTitel">Devices; our Composite Production Systems</div> | <div class="accordionTitel">Devices; our Composite Production Systems</div> | ||
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| + | <p> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/2/26/SDU2013_Protocol_0019.pdf" target="_blank">SDU2013 Protocol 0019 - USER PCR on dxs from <span class="specialWord">B. subtilis</span> </a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/2/26/SDU2013_Protocol_0020.pdf" target="_blank">SDU2013 Protocol 0020 - USER PCR on lac promoter (Plac)</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/3/35/SDU2013_Protocol_0021.pdf" target="_blank">SDU2013 Protocol 0021 - USER PCR</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/1/1f/SDU2013_Protocol_0022.pdf" target="_blank">SDU2013 Protocol 0022 - USER PCR on pSB1C3</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/a/a3/SDU2013_Protocol_0023.pdf" target="_blank">SDU2013 Protocol 0023 - USER PCR on pSB1C3 to dxs only part</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/a/a5/SDU2013_Protocol_0024.pdf" target="_blank">SDU2013 Protocol 0024 - USER PCR on pSB1A3 to Prenyltransferase (HRT2) only part</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/a/ad/SDU2013_Protocol_0025.pdf" target="_blank">SDU2013 Protocol 0025 - USER PCR on ara promoter (Para)</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d9/SDU2013_Protocol_0026.pdf" target="_blank">SDU2013 Protocol 0026 - USER cloning Plac-RBS-<span class="specialWord">dxs (B. subtilis)</span></a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d3/SDU2013_Protocol_0028.pdf" target="_blank">SDU2013 Protocol 0028 - PCR AraC</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/e/e4/SDU2013_Protocol_0029.pdf" target="_blank">SDU2013 Protocol 0029 - PCR LacI</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/8/8d/SDU2013_Protocol_0030.pdf" target="_blank">SDU2013 Protocol 0030 - USER PCR on Prenyltransferase (HRT2) to Prenyltransferase (HRT2) only part</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/b/b4/SDU2013_Protocol_0031.pdf" target="_blank">SDU2013 Protocol 0031 - USER PCR on Prenyltransferase (HRT2)</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/3/37/SDU2013_Protocol_0035.pdf" target="_blank">SDU2013 Protocol 0035 - USER cloning Para-HRT2-Plac-<span class="specialWord">dxs (B. subtilis)</span></a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/9/91/SDU2013_Protocol_0036.pdf" target="_blank">SDU2013 Protocol 0036 - USER cloning Para-HRT2</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/3/3e/SDU2013_Protocol_0041.pdf" target="_blank">SDU2013 Protocol 0041 - Cloning Prenyltransferase (HRT2) into pSB1C3/pSB1A3/pSB1K3</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/e/e4/SDU2013_Protocol_0042.pdf" target="_blank">SDU2013 Protocol 0042 - Cloning Plac-<span class="specialWord">dxs (B. subtilis)</span>-IspG</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/e/e3/SDU2013_Protocol_0043.pdf" target="_blank">SDU2013 Protocol 0043 - pSB1A3-AraC-HRT2</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/7/74/SDU2013_Protocol_0044.pdf" target="_blank">SDU2013 Protocol 0044 - pUC57 system</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d5/SDU2013_Protocol_0045.pdf" target="_blank">SDU2013 Protocol 0045 - pSB1C3 and pSB1K3 systems</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/7/76/SDU2013_Protocol_0046.pdf" target="_blank">SDU2013 Protocol 0046 - USER PCR on pSB1A3</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/e/ee/SDU2013_Protocol_0048.pdf" target="_blank">SDU2013 Protocol 0048 - Cloning LacI-Plac-<span class="specialWord">dxs (B. subtilis)</span>-IspG</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/7/73/SDU2013_Protocol_0040.pdf" target="_blank">SDU2013 Protocol 0040 - lacI device without LVA-tag</a><br> | ||
| + | </p> | ||
</div> | </div> | ||
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<div class="pane" style="height:300px;" > | <div class="pane" style="height:300px;" > | ||
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<b>AmilCP</b><br> | <b>AmilCP</b><br> | ||
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d9/SDU2013_Protocol_0003.pdf" target="_blank">0003</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d9/SDU2013_Protocol_0003.pdf" target="_blank">SDU2013 Protocol 0003 - USER PCR on pSB1C3</a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d8/SDU2013_Protocol_0004.pdf" target="_blank">0004</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d8/SDU2013_Protocol_0004.pdf" target="_blank">SDU2013 Protocol 0004 - USER PCR on AmilCP-linker</a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/6/64/SDU2013_Protocol_0005.pdf" target="_blank">0005</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/6/64/SDU2013_Protocol_0005.pdf" target="_blank">SDU2013 Protocol 0005 - USER PCR on <span class="specialWord">dxs (E. coli)</span></a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/b/ba/SDU2013_Protocol_0007.pdf" target="_blank">0007</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/b/ba/SDU2013_Protocol_0007.pdf" target="_blank">SDU2013 Protocol 0007 - USER cloning on pSB1C3 AmilCP-dxs</a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/f/fd/SDU2013_Protocol_0009.pdf" target="_blank">0009</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/f/fd/SDU2013_Protocol_0009.pdf" target="_blank">SDU2013 Protocol 0009 - PCR on <span class="specialWord">dxs (B. subtilis)</span></a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/2/29/SDU2013_Protocol_0027.pdf" target="_blank">0027</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/2/29/SDU2013_Protocol_0027.pdf" target="_blank">SDU2013 Protocol 0027 - USER cloning pSB1C3 and AmilCP</a><br> |
| - | < | + | </p><p> |
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<b>GFP</b><br> | <b>GFP</b><br> | ||
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/5/5e/SDU2013_Protocol_0010.pdf" target="_blank">0010</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/5/5e/SDU2013_Protocol_0010.pdf" target="_blank">SDU2013 Protocol 0010 - USER PCR <span class="specialWord">dxs (B. subtilis)</span></a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/8/8d/SDU2013_Protocol_0011.pdf" target="_blank">0011</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/8/8d/SDU2013_Protocol_0011.pdf" target="_blank">SDU2013 Protocol 0011 - USER PCR <span class="specialWord">dxs (E. coli)</span></a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/f/fb/SDU2013_Protocol_0012.pdf" target="_blank">0012</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/f/fb/SDU2013_Protocol_0012.pdf" target="_blank">SDU2013 Protocol 0012 - USER PCR pSB1C3</a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/4/42/SDU2013_Protocol_0013.pdf" target="_blank">0013</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/4/42/SDU2013_Protocol_0013.pdf" target="_blank">SDU2013 Protocol 0013 - USER PCR Plac</a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/7/79/SDU2013_Protocol_0014.pdf" target="_blank">0014</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/7/79/SDU2013_Protocol_0014.pdf" target="_blank">SDU2013 Protocol 0014 - USER PCR linker-GFP</a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/1/10/SDU2013_Protocol_0015.pdf" target="_blank">0015</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/1/10/SDU2013_Protocol_0015.pdf" target="_blank">SDU2013 Protocol 0015 - USER cloning <span class="specialWord">dxs (E. coli)</span></a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d7/SDU2013_Protocol_0016.pdf" target="_blank">0016</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d7/SDU2013_Protocol_0016.pdf" target="_blank">SDU2013 Protocol 0016 - USER PCR pSB1C3 for lac-<span class="specialWord">dxs (E. coli)</span></a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/4/42/SDU2013_Protocol_0018.pdf" target="_blank">0018</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/4/42/SDU2013_Protocol_0018.pdf" target="_blank">SDU2013 Protocol 0018 - USER cloning Plac-RBS-<span class="specialWord">dxs (B. subtilis)</span>-reporter</a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d3/SDU2013_Protocol_0038.pdf" target="_blank">0038</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/d/d3/SDU2013_Protocol_0038.pdf" target="_blank">SDU2013 Protocol 0038 - LacI-Plac-<span class="specialWord">dxs (E. coli)</span></a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/e/ea/SDU2013_Protocol_0047.pdf" target="_blank">0047</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/e/ea/SDU2013_Protocol_0047.pdf" target="_blank">SDU2013 Protocol 0047 - USER cloning Plac-RBS-dxs <span class="specialWord">(E. coli)-reporter</span></a><br> |
| - | + | </p> | |
| Line 229: | Line 262: | ||
<div class="accordionTitel">Characterization</div> | <div class="accordionTitel">Characterization</div> | ||
| - | <div class="pane current" style="height: | + | <div class="pane current" style="height:130px;" > |
| + | <p> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/9/9a/SDU2013_Protocol_0052.pdf" target="_blank">SDU2013 Protocol 0052 - Growth <span class="specialWord">lacI</span>-Plac-<span class="specialWord">dxs (B. subtilis)</span> vs. <span class="specialWord">lacI</span>-Plac-<span class="specialWord">dxs (B. subtilis)</span>-GFP</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/5/5c/SDU2013_Protocol_0053.pdf" target="_blank">SDU2013 Protocol 0053 - <span class="specialWord">lacI</span>-Plac-RBS-<span class="specialWord">dxs (B. subtilis)</span> Northern</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/5/5b/SDU2013_Protocol_0054.pdf" target="_blank">SDU2013 Protocol 0054 - <span class="specialWord">lacI</span>-Plac-RBS-<span class="specialWord">dxs (B. subtilis)</span>-linker-GFP</a><br> | ||
| + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/e/e6/SDU2013_Protocol_0055.pdf" target="_blank">SDU2013 Protocol 0055 - Induction assay on pSB1C3-<span class="specialWord">araC</span>-Para-HRT2-FLAG</a><br> | ||
| + | </p><p> | ||
| - | |||
| - | |||
| - | |||
| - | |||
<b>Sequencing</b><br> | <b>Sequencing</b><br> | ||
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/f/fd/SDU2013_Protocol_0008.pdf" target="_blank">0008</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/f/fd/SDU2013_Protocol_0008.pdf" target="_blank">SDU2013 Protocol 0008 - Sequencing of <span class="specialWord">E. coli</span> Dxs standard part</a><br> |
| - | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/1/1f/SDU2013_Protocol_0049.pdf" target="_blank">0049</a><br> | + | <a class="pdfFile" href="https://static.igem.org/mediawiki/2013/1/1f/SDU2013_Protocol_0049.pdf" target="_blank">SDU2013 Protocol 0049 - Basic sequencing</a><br> |
| - | + | </p> | |
</div> | </div> | ||
Latest revision as of 23:01, 28 October 2013
Complete Journal
Protocols & important dates
"If it is not documented, it doesn’t exist." - Louis Fried
Obviously, Louis Fried was wrong - and luckily so, we might add! But it is true that if it is not documented, we don't know whether it exist. So please, click through the tabs below and catch a quick glimpse of our most treasured moments of the summer. We kept a calender of special events since the start of the project. And if you have the yearning (particularly after reading our Results), open up our thorough protocols below.
February
28.02.2013 - Assembly of the team
March
08.03.2013 - 10.03.2013 - Teambuilding: iGEM crash course (DTU)
21.03.2013 - First meeting: get to know each other
April - Brainstorming
29.04.2013 - Social dinner and introduction to wiki design
May - Brainstorming
08.05.2013 - A consensus was reached: Bacteriorganic Rubber
July
11.07.2013 - Barbeque dinner
17.07.2013 - Tour des chambres
August
08.08.2013 - Squash tournament
22.08.2013 - Cabaret show, HCA festival 2013
31.08.2013 - 01.09.2013 - DK meetup
September
04.09.2013 - Supervisor Ann makes dinner for responsibility delegation meeting
25.09.2013 - Dinner after status meeting
26.09.2013 - Dinner with previous SDU iGEM teams
October
03.10.2013 - Late-night pizza
July
21.07.2013 - pSB1C3-Pcon-dxs (B. subtilis)-amilCP
25.07.2013 - B. subtilis DXS biobrick
25.07.2013 - E. coli IspG biobrick
29.07.2013 - pSB1C3-Plac-dxs (B. subtilis)-linker-GFP
31.07.2013 - pSB1C3-Plac-dxs (E. coli)-linker-GFP
August
01.08.2013 - We realized LacI should be overexpressed in order to get repression of the lac promoter
01.08.2013 - Sequencing of E. coli dxs standard part
05.08.2013 - pSB1C3-Plac-dxs (B. subtilis)
19.08.2013 - HRT2 biobrick
19.08.2013 - pSB1C3-Plac-dxs (E. coli)
19.08.2013 - pSB1C3-Pcon-lacI:LVA-term
17.09.2013 - LacI BioBrick
17.08.2013 - pSB1C3-Pcon-araC-term
21.08.2013 - pSB1C3-lacI:LVA-Plac-dxs (B. subtilis)
23.08.2013 - pSB1C3-lacI:LVA-Plac-dxs (B. subtilis)-linker-GFP
24.08.2013 - Characterization of LacI:LVA function
24.08.2013 - Confirmation that we could control the expression of Dxs with LacI:LVA using IPTG
28.08.2013 - pSB1C3-lacI:LVA-Plac-dxs (E. coli)
30.08.2013 - pSB1C3-Para-HRT2-(FLAG)
30.08.2013 - Growth experiment for MG1655/pSB1C3-lacI:LVA-Plac-dxs (B. subtilis)+/-GFP
September
13.09.2013 - pSB1C3-araC-Para-HRT2-(FLAG)
17.09.2013 - pSB1C3-lacI-Plac-dxs (B. subtilis)-linker-GFP
17.09.2013 - Characterized device with LacI and found that it functions better than LacI:LVA
20.09.2013 - Growth experiment for MG1655/pSB1C3-lacI-Plac-dxs (B. subtilis)
21.09.2013 - pSB1K3-araC-Para-HRT2-(FLAG)
21.09.2013 - Growth experiment for MG1655/pSB1C3-lacI-Plac-dxs (B. subtilis)-GFP
22.09.2013 - pSB1C3-lacI-Plac-dxs (B. subtilis)
October
01.10.2013 - Characterization of AraC function
02.10.2013 - Confirmation that we could induce and control the expression of HRT2
August
09.08.2013 - Team project description due
30.08.2013 - Track selection
30.08.2013 - Project title
September
23.09.2013 - BioBricks Part DNA shipped to iGEM HQ
25.09.2013 - BioBricks Part DNA at the Registry (Received at iGEM)
October
04.10.2013 - European Wiki freeze
11.10.2013 - 13.10.2013 - Regional Jamboree Lyon
28.10.2013 - World Championship Wiki freeze
November
01.11.2013 - 05.11.2013 - World Championship Jamboree Boston
When working together in a large group, particularly on such a large project, it is simply impossible for anyone to maintain an overview over the entire project in real time. That is why it is important to keep protocols of every part of the project, to document every experiment that is performed. This allows each team member to backtrack and to resolve any issues with (or mistakes made in) previous experiments. Countless digestions and hundreds of PCR reaction were done, and the explicit protocols established which setups were effective, and which were not. Our iGEM-team has kept protocols since the dawn of the project, and they have proven to be an invaluable resource, which saved us quite a bit of time. To ensure the consistency of execution, each experiment was done by following one of our Standard Operating Procedures, which can be found under "SOPs".
Click on the project title below to expand the window and get an overview of the protocols for each project part. Each protocol name is a link to a pdf file that will open in a new window. All were written on the basis of our Protocol Template
SDU2013 Protocol 0001 - USER primer design
SDU2013 Protocol 0002 - Standard primer design
SDU2013 Protocol 0050 - SDM on Plac - dxs (E. coli)
SDU2013 Protocol 0051 - SDM on dxs (E. coli) amilCP
SDU2013 Protocol 0006.1 - Dxs from B. subtilis
SDU2013 Protocol 0006.2 - Dxs from B. subtilis
SDU2013 Protocol 0017 - IspG
SDU2013 Protocol 0032 - Prenyltransferase
SDU2013 Protocol 0033 - LacI
SDU2013 Protocol 0034 - AraC
SDU2013 Protocol 0037 - LacI and AraC
SDU2013 Protocol 0039 - LacI without LVA-tag
SDU2013 Protocol 0019 - USER PCR on dxs from B. subtilis
SDU2013 Protocol 0020 - USER PCR on lac promoter (Plac)
SDU2013 Protocol 0021 - USER PCR
SDU2013 Protocol 0022 - USER PCR on pSB1C3
SDU2013 Protocol 0023 - USER PCR on pSB1C3 to dxs only part
SDU2013 Protocol 0024 - USER PCR on pSB1A3 to Prenyltransferase (HRT2) only part
SDU2013 Protocol 0025 - USER PCR on ara promoter (Para)
SDU2013 Protocol 0026 - USER cloning Plac-RBS-dxs (B. subtilis)
SDU2013 Protocol 0028 - PCR AraC
SDU2013 Protocol 0029 - PCR LacI
SDU2013 Protocol 0030 - USER PCR on Prenyltransferase (HRT2) to Prenyltransferase (HRT2) only part
SDU2013 Protocol 0031 - USER PCR on Prenyltransferase (HRT2)
SDU2013 Protocol 0035 - USER cloning Para-HRT2-Plac-dxs (B. subtilis)
SDU2013 Protocol 0036 - USER cloning Para-HRT2
SDU2013 Protocol 0041 - Cloning Prenyltransferase (HRT2) into pSB1C3/pSB1A3/pSB1K3
SDU2013 Protocol 0042 - Cloning Plac-dxs (B. subtilis)-IspG
SDU2013 Protocol 0043 - pSB1A3-AraC-HRT2
SDU2013 Protocol 0044 - pUC57 system
SDU2013 Protocol 0045 - pSB1C3 and pSB1K3 systems
SDU2013 Protocol 0046 - USER PCR on pSB1A3
SDU2013 Protocol 0048 - Cloning LacI-Plac-dxs (B. subtilis)-IspG
SDU2013 Protocol 0040 - lacI device without LVA-tag
AmilCP
SDU2013 Protocol 0003 - USER PCR on pSB1C3
SDU2013 Protocol 0004 - USER PCR on AmilCP-linker
SDU2013 Protocol 0005 - USER PCR on dxs (E. coli)
SDU2013 Protocol 0007 - USER cloning on pSB1C3 AmilCP-dxs
SDU2013 Protocol 0009 - PCR on dxs (B. subtilis)
SDU2013 Protocol 0027 - USER cloning pSB1C3 and AmilCP
GFP
SDU2013 Protocol 0010 - USER PCR dxs (B. subtilis)
SDU2013 Protocol 0011 - USER PCR dxs (E. coli)
SDU2013 Protocol 0012 - USER PCR pSB1C3
SDU2013 Protocol 0013 - USER PCR Plac
SDU2013 Protocol 0014 - USER PCR linker-GFP
SDU2013 Protocol 0015 - USER cloning dxs (E. coli)
SDU2013 Protocol 0016 - USER PCR pSB1C3 for lac-dxs (E. coli)
SDU2013 Protocol 0018 - USER cloning Plac-RBS-dxs (B. subtilis)-reporter
SDU2013 Protocol 0038 - LacI-Plac-dxs (E. coli)
SDU2013 Protocol 0047 - USER cloning Plac-RBS-dxs (E. coli)-reporter
SDU2013 Protocol 0052 - Growth lacI-Plac-dxs (B. subtilis) vs. lacI-Plac-dxs (B. subtilis)-GFP
SDU2013 Protocol 0053 - lacI-Plac-RBS-dxs (B. subtilis) Northern
SDU2013 Protocol 0054 - lacI-Plac-RBS-dxs (B. subtilis)-linker-GFP
SDU2013 Protocol 0055 - Induction assay on pSB1C3-araC-Para-HRT2-FLAG
Sequencing
SDU2013 Protocol 0008 - Sequencing of E. coli Dxs standard part
SDU2013 Protocol 0049 - Basic sequencing
