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Team:BostonU/QS
From 2013.igem.org
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<p>Quorum sensing is a system that controls population density using stimulus and response. These types of systems can be commandeered for use in synthetic biology and re-engineering to control gene expression in genetic circuits that are implanted in bacteria. The bacteria utilize quorum sensing to coordinate gene expression. To do so, the bacteria produce and secrete signaling molecules. These bacteria have receptors that detect the signaling molecule. When the signaling molecule binds to the receptor, it induces gene expression. The presence of one or more proteins will induce a promoter that controls the production of signal proteins, such as fluorescent proteins, or of other functional genes to link synthetic genetic circuits together.</p> | <p>Quorum sensing is a system that controls population density using stimulus and response. These types of systems can be commandeered for use in synthetic biology and re-engineering to control gene expression in genetic circuits that are implanted in bacteria. The bacteria utilize quorum sensing to coordinate gene expression. To do so, the bacteria produce and secrete signaling molecules. These bacteria have receptors that detect the signaling molecule. When the signaling molecule binds to the receptor, it induces gene expression. The presence of one or more proteins will induce a promoter that controls the production of signal proteins, such as fluorescent proteins, or of other functional genes to link synthetic genetic circuits together.</p> | ||
| - | <p>A | + | <p>A LuxI/LuxR-type quorum sensing system has been detected in <i>Chromobacterium violaceum</i> <a href="http://jb.asm.org/content/193/15/3871.full">(Stauff et al., 2011)</a>. The goal is to introduce a new LuxR/I-like quorum sensing system to synthetic biology via MoClo. <i>Chromobacterium violaceum</i>, a gram-negative bacteria found in flora from water and soil in tropical and subtropical regions, uses the CviR/I system. The CviR/I system is homologous to the LuxR/I system and pVioA is a promoter with CviR binding site.</p> |
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| + | <p>We've designed the circuit below to test the CviI/CviR system using the MoClo assembly method. This will require us to generate three new Level 0 Parts (CviI, CviR, and pVioA). We have obtained <i>Chromobacterium violaceum</i> genomic DNA from the Holden Lab at the University of Wisconsin and will utilize PCR to amplify these parts. This also requires a fifth transcriptional unit, which will expand the library beyond the 4-TU system we're currently working with. We will need to generate new destination vectors prior to making the Level 0 parts for the promoter and terminator as shown in the circuit design below.</h7> | ||
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<h6>New Level 0 Parts</h6> | <h6>New Level 0 Parts</h6> | ||
| - | <h7><p>We have successfully made three new parts while working on the QS project. <a href="http://parts.igem.org/Part:BBa_K1114205">CviI</a> and <a href="http://parts.igem.org/Part:BBa_K1114206">CviR</a> were submitted to the Registry as Level 0 MoClo Parts. The pVioA promoter was confirmed after the DNA submission deadline and was not included in our submission.</ | + | <h7><p>We have successfully made three new parts while working on the QS project. <a href="http://parts.igem.org/Part:BBa_K1114205">CviI</a> and <a href="http://parts.igem.org/Part:BBa_K1114206">CviR</a> were submitted to the Registry as Level 0 MoClo Parts. The pVioA promoter was confirmed after the DNA submission deadline and was not included in our submission. All three parts are now sequence verified. </p> |
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| + | <p>We have created one new destination vector but are still working on the second destination vector for the fifth transcriptional unit. We hope to have these vectors confirmed soon and will continue working on creating the final transcriptional unit for our design.</p> | ||
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| + | <p>Our next steps involve testing the CviI/CviR genes for function and checking them for cross-reactivity with LuxI/LuxR.</p></h7> | ||
<h6>pVioA as a Constitutive Promoter</h6> | <h6>pVioA as a Constitutive Promoter</h6> | ||
Revision as of 01:19, 28 September 2013
Quorum Sensing
Quorum sensing is a system that controls population density using stimulus and response. These types of systems can be commandeered for use in synthetic biology and re-engineering to control gene expression in genetic circuits that are implanted in bacteria. The bacteria utilize quorum sensing to coordinate gene expression. To do so, the bacteria produce and secrete signaling molecules. These bacteria have receptors that detect the signaling molecule. When the signaling molecule binds to the receptor, it induces gene expression. The presence of one or more proteins will induce a promoter that controls the production of signal proteins, such as fluorescent proteins, or of other functional genes to link synthetic genetic circuits together.
A LuxI/LuxR-type quorum sensing system has been detected in Chromobacterium violaceum (Stauff et al., 2011). The goal is to introduce a new LuxR/I-like quorum sensing system to synthetic biology via MoClo. Chromobacterium violaceum, a gram-negative bacteria found in flora from water and soil in tropical and subtropical regions, uses the CviR/I system. The CviR/I system is homologous to the LuxR/I system and pVioA is a promoter with CviR binding site.
We've designed the circuit below to test the CviI/CviR system using the MoClo assembly method. This will require us to generate three new Level 0 Parts (CviI, CviR, and pVioA). We have obtained Chromobacterium violaceum genomic DNA from the Holden Lab at the University of Wisconsin and will utilize PCR to amplify these parts. This also requires a fifth transcriptional unit, which will expand the library beyond the 4-TU system we're currently working with. We will need to generate new destination vectors prior to making the Level 0 parts for the promoter and terminator as shown in the circuit design below.
New Level 0 Parts
We have successfully made three new parts while working on the QS project. CviI and CviR were submitted to the Registry as Level 0 MoClo Parts. The pVioA promoter was confirmed after the DNA submission deadline and was not included in our submission. All three parts are now sequence verified.
We have created one new destination vector but are still working on the second destination vector for the fifth transcriptional unit. We hope to have these vectors confirmed soon and will continue working on creating the final transcriptional unit for our design.
Our next steps involve testing the CviI/CviR genes for function and checking them for cross-reactivity with LuxI/LuxR.
pVioA as a Constitutive Promoter
We have successfully characterized the pVioA promoter as a constitutive promoter controlling RFP expression (first transcriptional unit in diagram above). For more information on how we ran our characterization experiment, please check out our Data Collected page.
The graphs below show MEFL converted RFP measurements (done using the TASBE tools). The data is binned by fluorescence intensity and each bin also includes the cell count. The bottom graph shows the same data as the top one above but it is ordered by cell count, from highest (dark purple) to lowest (pale purple).
We can now see that within the population of cells, the smallest binned group shows the highest level of expression. This may be due to higher copy counts of plasmids within that subpopulation of cells.
We plan to continue with this work and hope to have an update on our progress at the Jamboree!
