"
Team:TU Darmstadt/labbook/Cutinase
From 2013.igem.org
(Created page with "<html> <style type="text/css"> body { margin:0; padding:15px 0 0; background-color: #ececec; background-image:url("https://static.igem.org/mediawiki/2013/1/14/Background_(3000x180_P...") |
|||
| Line 113: | Line 113: | ||
</div> | </div> | ||
| + | |||
| + | <html> | ||
| + | <head> | ||
| + | <title></title> | ||
| + | <h1>Project Functional FSC </h1> | ||
| + | |||
| + | <p>In order to improve a part of last year, we choose a functional production construct with the excellent PET | ||
| + | degrading enzyme: .</p> | ||
| + | |||
| + | <p>To achieve this goal, first, the FSC coding sequence has to be amplified out of the pET22b(+):BBa K808025 plasmid | ||
| + | (derived from Sven Jager, TU-Darmstadt). This plasmid includes the FSC gene fused to the gene of | ||
| + | mRFP1 (Part:BBa_E1010). Due to this, we were able to quantify the production process of the FSC. Moreover, this approach | ||
| + | will result in an convenient screening of mutants and wild type enzyme, using IPTG in LB agar plates (e.g 0.1 to 0.5mM) | ||
| + | The amplified gene will be in frame with the pelb leader sequence in order to direct the FSC to E.colis periplasm. | ||
| + | This feature is important for the maturation of the three disulfide bonds. These bonds are only formed under oxidative conditions. | ||
| + | Without this feature the FSC will be unfunctional. Additionally, we take the ribosom binding site from the pET22b(+) vector. | ||
| + | Moreover, to achieve high purity of the protein, the FSC fusion gene will get an His-Tag at the C-terminus. Therefore, we | ||
| + | designed overlap primers with the corresponding motive. This feature is important for the purification of the protein of interest. | ||
| + | For an easy cleavage of the reporter as well as the His-Tag, we found a TEV site between the N-Terminus of the FSC and the C-terminal region. | ||
| + | Furthermore, to optimize the expression and thus receiving a higher protein yield, the FSC (in frame with the pELB leader sequence) | ||
| + | will be cloned in front of an arabinose inducible promotor (e.g. pBAD (PID: BBa I0500)). For the backbone we used the overlap fragment | ||
| + | from the TLO-CMK inFusion approach.</p> | ||
| + | |||
| + | |||
| + | <h1>Method</h1> | ||
| + | <p>For the construction we used a three part assembly with the excellent inFusion method | ||
| + | (link einfügen zu methoden). First, we have to aplly an overlap extension PCR to all | ||
| + | parts of the final construct. After purifying all parts, we performed the inFusion reaction. | ||
| + | Parts for the inFusion reaction: pSB1C3 (100ng), pBAD(30ng) and FSC-mRFP1(150ng). | ||
| + | Fortunately, we could use the overlapped backbone from the inFusion approach from TLO-CMK.</p> | ||
| + | |||
| + | <h1>Primers</h1> | ||
| + | |||
| + | |||
| + | <ul> | ||
| + | <li>>pET|OEPCR|FOR<ul> | ||
| + | <li>CGG CCG CTA CTA GTA TCA GTG GTG GTG GTG GTG GTG A (37 bp)</li> | ||
| + | </ul></li> | ||
| + | </ul> <br> | ||
| + | |||
| + | |||
| + | <ul> | ||
| + | <li>>pET|OEPCR|REV<ul> | ||
| + | <li>GGC TAG CAA GGA GAT ATA CAT ATG AAA TAC CTG CTG CC (38 bp) </li> | ||
| + | </ul></li> | ||
| + | </ul> <br> | ||
| + | |||
| + | <ul> | ||
| + | <li>>pBad|OEPCR|FOR<ul> | ||
| + | <li>CGG CCG CTT CTA GAG ACA TTG ATT ATT TGC ACG GCG T (37 bp)</li> | ||
| + | </ul></li> | ||
| + | </ul> <br> | ||
| + | <ul> | ||
| + | <li>>pBad|OEPCR|REV<ul> | ||
| + | <li>ATC TCC TTG CTA GCC CAA AAA AAC GGT ATG GAG (33 bp) </li> | ||
| + | </ul></li> | ||
| + | </ul> <br> | ||
| + | |||
| + | |||
| + | |||
| + | |||
| + | <h1>Results</h1> | ||
| + | <p>First, the cloning approach, using inFusion yields in numerous positive clones. | ||
| + | Afterwards, the clones were screened with the standard primers vr and vf. | ||
| + | The inFusion reaction yields in 4 positive clones.</p> | ||
| + | <p align="center"> | ||
| + | <img src="https://static.igem.org/mediawiki/2013/8/85/Darmstadt13_fFsc_overlappingPCR.png" alt="xxx"> <br><br><br> | ||
| + | |||
| + | <img src="https://static.igem.org/mediawiki/2013/e/e4/Darmstadt13_fFsc_colonyPCR.png" alt="xxx"> <br><br><br> | ||
| + | |||
| + | <img src="https://static.igem.org/mediawiki/2013/3/39/Gold_konstrukt_sven.png" alt="xxx"> <br> | ||
| + | </p> | ||
| + | |||
| + | </head> | ||
| + | <body> | ||
| + | </body> | ||
| + | </html> | ||
Revision as of 20:28, 4 October 2013
.jpg){kind=small}
Project Functional FSC
In order to improve a part of last year, we choose a functional production construct with the excellent PET degrading enzyme: .
To achieve this goal, first, the FSC coding sequence has to be amplified out of the pET22b(+):BBa K808025 plasmid (derived from Sven Jager, TU-Darmstadt). This plasmid includes the FSC gene fused to the gene of mRFP1 (Part:BBa_E1010). Due to this, we were able to quantify the production process of the FSC. Moreover, this approach will result in an convenient screening of mutants and wild type enzyme, using IPTG in LB agar plates (e.g 0.1 to 0.5mM) The amplified gene will be in frame with the pelb leader sequence in order to direct the FSC to E.colis periplasm. This feature is important for the maturation of the three disulfide bonds. These bonds are only formed under oxidative conditions. Without this feature the FSC will be unfunctional. Additionally, we take the ribosom binding site from the pET22b(+) vector. Moreover, to achieve high purity of the protein, the FSC fusion gene will get an His-Tag at the C-terminus. Therefore, we designed overlap primers with the corresponding motive. This feature is important for the purification of the protein of interest. For an easy cleavage of the reporter as well as the His-Tag, we found a TEV site between the N-Terminus of the FSC and the C-terminal region. Furthermore, to optimize the expression and thus receiving a higher protein yield, the FSC (in frame with the pELB leader sequence) will be cloned in front of an arabinose inducible promotor (e.g. pBAD (PID: BBa I0500)). For the backbone we used the overlap fragment from the TLO-CMK inFusion approach.
Method
For the construction we used a three part assembly with the excellent inFusion method (link einfügen zu methoden). First, we have to aplly an overlap extension PCR to all parts of the final construct. After purifying all parts, we performed the inFusion reaction. Parts for the inFusion reaction: pSB1C3 (100ng), pBAD(30ng) and FSC-mRFP1(150ng). Fortunately, we could use the overlapped backbone from the inFusion approach from TLO-CMK.
Primers
- >pET|OEPCR|FOR
- CGG CCG CTA CTA GTA TCA GTG GTG GTG GTG GTG GTG A (37 bp)
- >pET|OEPCR|REV
- GGC TAG CAA GGA GAT ATA CAT ATG AAA TAC CTG CTG CC (38 bp)
- >pBad|OEPCR|FOR
- CGG CCG CTT CTA GAG ACA TTG ATT ATT TGC ACG GCG T (37 bp)
- >pBad|OEPCR|REV
- ATC TCC TTG CTA GCC CAA AAA AAC GGT ATG GAG (33 bp)
Results
First, the cloning approach, using inFusion yields in numerous positive clones. Afterwards, the clones were screened with the standard primers vr and vf. The inFusion reaction yields in 4 positive clones.
