Team:KU Leuven/Project/HoneydewSystem

From 2013.igem.org

(Difference between revisions)
Line 26: Line 26:
-
<div class="row-fluid">
 
-
<div class="span12 white">
 
-
  <div class="row-fluid">
 
-
 
-
  <div class="span6">
 
-
    <p align="justify">
 
-
We thought of two different methods to carry out our system. One method would be to <b> spray our BanAphids onto the plants </b>. Keeping into account the possible hurdles we mentioned before, BanAphids will produce MeS in response to an external signal that indicates the presence of aphids, in order to reduce the burden on the plant cell’s metabolism and attract predators only when needed. This external signal is <b> honeydew </b>, since aphids produce high amounts of this. Honeydew is a very glucose rich substance, which is the reason why ants ‘farm’ aphids, so they can milk their honeydew.</p>
 
-
    </div>
 
-
 
-
  <div class="span6 greytext">
 
-
    <img src="https://static.igem.org/mediawiki/2013/8/86/TetRconstruct.png">
 
-
    <p align="justify"> <b>Tet repressor under low glucose promoter</b> </p>
 
-
  <img src="https://static.igem.org/mediawiki/2013/6/6d/AroGconstruct.png">
 
-
    <p align="justify"> <b> AroG, LacI construct </b> </p>
 
-
  </div>
 
-
 
-
  </div>
 
-
</div>
 
-
</div>
 
 +
<!-- Design-->
<div class="row-fluid">
<div class="row-fluid">
-
  <div class="span12 white">
+
  <div class="span12 icon-small white">
-
 
+
-
pCaiF is a low glucose promoter, so <b>when aphids are present on the plant and thereby honeydew </b>, TetR will <b>not </b> be transcribed. ptetR, a TetR repressible promoter, will be active in this case so that <I>lacI</I> and <I>aroG*</I> will be transcribed. <I>aroG</I> encodes for the enzyme 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase, which will convert erythrose-4-phosphate and phosphoenolpyruvate into 3-deoxy-arabine-heptulosonate-7-phosphate, a precursor of chorismate. <b>We have mutated <I>aroG</I> into <I>aroG*</I> in order to inhibit the negative feedback mechanism of phenylalanine to increase the activity of DAHP synthase so that the chorismate concentration is increased</b>.
+
-
  </div>
+
-
 
+
-
</div>
+
-
 
+
-
<div class="row-fluid">
+
-
<div class="span12 white">
+
   <div class="row-fluid">
   <div class="row-fluid">
-
 
+
   <div class="span2 bg-ecology visible-desktop">
-
   <div class="span6 greytext">
+
    <a href="https://2013.igem.org/Team:KU_Leuven/Project/Glucosemodel/Design">
-
  <img src="https://static.igem.org/mediawiki/2013/5/54/MeSconstruct.png">
+
    <i class="livicon activeicon" data-name="pen" data-onparent="true" data-color="white"></i>
-
  <p><b>MeS construct to convert salicylic acid into MeS</b></p>
+
   </div>
   </div>
-
 
+
-
   <div class="span6">
+
   <div class="span10 icon-text ">
-
  <p align="justify">The following construct will <b> convert the chorismate produced into salicylic acid and then into MeS</b>. The original BioBrick from the 2006 MIT team (<a href="http://parts.igem.org/Part:BBa_J45700">Bba_J45700</a>) contained a <I>lac</I> promoter in front of the <I>pchBA gene</I>. The <I>pchBA</I> gene encodes an enzyme that converts chorismate into salicylic acid. Since this would interfere with our system (we use LacI), we replaced this promoter with another <i>tetR</i> promoter.</p>
+
    <h3>Design of our glucosemodel</h3> </a>
 +
    <div class="row-fluid">
 +
    <div class="span12">
 +
      <p align="justify">Tekst Glucosemodel</p>
 +
    </div>
 +
    </div>
   </div>
   </div>
-
 
   </div>
   </div>
-
</div>
 
-
</div>
 
-
 
-
<div class="row-fluid">
 
-
<div class="span12 white">
 
-
  <div class="row-fluid">
 
-
 
-
  <div class="span6">
 
-
  <p align="justify">
 
-
cpram is a constitutive promoter so the EBF synthase gene will be constitutively transcribed and EBF constitutively produced. However, there is a <I>lac</I> operator present and since<b> LacI is transcribed when honeydew is present</b> (see above), <b>EBF synthase transcription is inhibited in the presence of honeydew </b>.  In the absence of aphids, EBF is constitutively expressed and aphids are thus repelled. However, as mentioned before, EBF could lose its aphid repellent effect due to habituation.
 
-
  </p>
 
-
  </div>
 
-
 
-
  <div class="span6 greytext">
 
-
  <img src="https://static.igem.org/mediawiki/2013/c/c4/EBFconstruct.png">
 
-
  <p><b>EBF construct</b></p>
 
-
  </div>
 
-
 
-
  </div>
 
-
</div>
 
-
</div>
 
-
 
-
<div class="row-fluid">
 
-
<div class="span12 white">
 
-
 
-
    <p align="justify">So if certain aphids do happen to escape the EBF repellent signal, the <b> MeS acts as a counter signal </b> and <b>attracts natural predators </b> of the aphid such as ladybugs and green lacewings. <b>Aphids will activate the MeS cycle due to the presence of honeydew</b>.</p>
 
-
 
  </div>
  </div>
</div>
</div>
Line 163: Line 113:
  </div>
  </div>
</div>
</div>
 +
 +
<!-- MeS FBA-->
 +
<div class="row-fluid">
 +
<div class="span12 icon-small white">
 +
  <div class="row-fluid">
 +
  <div class="span2 bg-ecology visible-desktop">
 +
    <a href="https://2013.igem.org/Team:KU_Leuven/Project/Glucosemodel/MeS/Modelling-FBA">
 +
    <i class="livicon activeicon" data-name="linechart" data-onparent="true" data-color="white"></i>
 +
  </div>
 +
 +
  <div class="span10 icon-text ">
 +
    <h3>Methyl Salicylate - Flux Balance Analysis</h3> </a>
 +
    <div class="row-fluid">
 +
    <div class="span12">
 +
      <p align="justify">Tekst over flux balance analysis</p>
 +
    </div>
 +
    </div>
 +
  </div>
 +
  </div>
 +
</div>
 +
</div>
 +
<!-- qPCR -->
<!-- qPCR -->

Revision as of 21:23, 4 October 2013

iGem

Secret garden

Congratulations! You've found our secret garden! Follow the instructions below and win a great prize at the World jamboree!


  • A video shows that two of our team members are having great fun at our favourite company. Do you know the name of the second member that appears in the video?
  • For one of our models we had to do very extensive computations. To prevent our own computers from overheating and to keep the temperature in our iGEM room at a normal level, we used a supercomputer. Which centre maintains this supercomputer? (Dutch abbreviation)
  • We organised a symposium with a debate, some seminars and 2 iGEM project presentations. An iGEM team came all the way from the Netherlands to present their project. What is the name of their city?

Now put all of these in this URL:https://2013.igem.org/Team:KU_Leuven/(firstname)(abbreviation)(city), (loose the brackets and put everything in lowercase) and follow the very last instruction to get your special jamboree prize!

tree ladybugcartoon

We aim to achieve a sustainable way to reduce the damage caused by aphid pests, and offer an effective alternative for insecticides. Our modified E. coli, the BanAphid (meaning ‘to ban aphids’ as well as with ‘benefits’), would imitate insecticides by using the aphid’s own alarm pheromone, E-β-farnesene, (EBF) to repel them off the plant. On top of that we want to attract aphid predators such as the ladybug by using methyl salicylate (MeS), a phytohormone. This way we make sure the aphids are thoroughly removed from the plant.
We have established what might be possible hurdles in introducing this system in the agricultural industry. First we have to make sure that the plant cell’s metabolism is not over burdened. Besides that we have to take into account that aphids might habituate to constitutive expression of EBF (De Vos et al., 2010, Kunert et al., 2010). Finally, we do not want to attract the aphid’s natural predators when they are not needed.

Design of our glucosemodel

Tekst Glucosemodel

E-β-Farnesene

EBF serves as the most universal aphid alarm pheromone. It is released from the cornicles of the aphids to warn others against upcoming danger, such as the natural predators of aphids. Because of the fact that EBF is highly susceptible to oxidation, we want to make our BanAphids produce EBF regularly.

Methyl Salicylate - Wetlab

Methyl salicylate is a pheromone released by plants when they are attacked by aphids. It activates plant defence systems, as well as attract predators of the aphids, such as the ladybug or the green lacewing. In the lab we have focused on increasing the production of methyl salicylate of an existing brick, by increasing the production of its precursor, chorismate.

Methyl Salicylate - Modelling

We have modeled the production system of methyl salicylate by using the transcription, translation and protein degradation rate in order to calculate the mRNA and protein flux. We also brought the kinetics of methyl salicylate synthesis into account.

Methyl Salicylate - Flux Balance Analysis

Tekst over flux balance analysis

qPCR

We did a qPCR to check whether our genes of interest are properly transcribed. Also, the amount of mRNA we can measure with qPCR could serve as input data for our methyl salicylate model.

Retrieved from "http://2013.igem.org/Team:KU_Leuven/Project/HoneydewSystem"