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User:ChristopherW
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| Line 31: | Line 31: | ||
|- | |- | ||
|A (Ala) | |A (Ala) | ||
| - | | | + | |3 (8.57%) |
|R (Arg) | |R (Arg) | ||
|0 (0.00%) | |0 (0.00%) | ||
| Line 37: | Line 37: | ||
|0 (0.00%) | |0 (0.00%) | ||
|D (Asp) | |D (Asp) | ||
| - | | | + | |2 (5.71%) |
|C (Cys) | |C (Cys) | ||
| - | | | + | |1 (2.86%) |
|Q (Gln) | |Q (Gln) | ||
| - | | | + | |2 (5.71%) |
|E (Glu) | |E (Glu) | ||
| - | | | + | |1 (2.86%) |
|G (Gly) | |G (Gly) | ||
| - | | | + | |1 (2.86%) |
|H (His) | |H (His) | ||
| - | | | + | |1 (2.86%) |
|- | |- | ||
|K (Lys): | |K (Lys): | ||
| - | |2 ( | + | |2 (5.71%) |
|M (Met) | |M (Met) | ||
| - | | | + | |2 (5.71%) |
|F (Phe) | |F (Phe) | ||
| - | | | + | |2 (5.71%) |
|P (Pro) | |P (Pro) | ||
| - | | | + | |2 (5.71%) |
|S (Ser) | |S (Ser) | ||
| - | | | + | |3 (8.57%) |
|T (Thr) | |T (Thr) | ||
| - | | | + | |3 (8.57%) |
|W (Trp) | |W (Trp) | ||
| - | | | + | |2 (5.71%) |
|Y (Tyr) | |Y (Tyr) | ||
| - | | | + | |2 (5.71%) |
|V (Val) | |V (Val) | ||
| - | | | + | |2 (5.71%) |
|- | |- | ||
|colspan="3"|'''Amino acid counting:''' | |colspan="3"|'''Amino acid counting:''' | ||
|colspan="3"|Total number of amino acids (aa): | |colspan="3"|Total number of amino acids (aa): | ||
| - | |colspan="2"| | + | |colspan="2"|35 |
| - | |colspan="3"|Number of positively charged aa: | + | |colspan="3"|Number of positively charged aa (Arg + Lys): |
| - | |colspan="2"| | + | |colspan="2"|2 |
| - | |colspan="3"|Number of negatively charged aa: | + | |colspan="3"|Number of negatively charged aa (Asp + Glu): |
| - | |colspan="2"| | + | |colspan="2"|3 |
|- | |- | ||
|colspan="3"|'''Biochemical parameters:''' | |colspan="3"|'''Biochemical parameters:''' | ||
|colspan="3"|Molecular weight [Da]: | |colspan="3"|Molecular weight [Da]: | ||
| - | |colspan="2"| | + | |colspan="2"|3613.05 |
|colspan="3"|Theoretical pI: | |colspan="3"|Theoretical pI: | ||
| - | |colspan="2"| | + | |colspan="2"|5.38 |
|colspan="3"|Extinction coefficient: | |colspan="3"|Extinction coefficient: | ||
|colspan="2"|?4? | |colspan="2"|?4? | ||
Revision as of 20:27, 16 July 2013
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Sample Output
| Automatically determined parameters using the [http://www.mediawiki.org/wiki/Table BioBrick-AutoAnnotator] | |||||||||||||||||||
| BioBrick: BBa_K1159000 | Used open reading frame from position ?x? to ?y?. | ||||||||||||||||||
| A (Ala) | 3 (8.57%) | R (Arg) | 0 (0.00%) | N (Asn) | 0 (0.00%) | D (Asp) | 2 (5.71%) | C (Cys) | 1 (2.86%) | Q (Gln) | 2 (5.71%) | E (Glu) | 1 (2.86%) | G (Gly) | 1 (2.86%) | H (His) | 1 (2.86%) | ||
| K (Lys): | 2 (5.71%) | M (Met) | 2 (5.71%) | F (Phe) | 2 (5.71%) | P (Pro) | 2 (5.71%) | S (Ser) | 3 (8.57%) | T (Thr) | 3 (8.57%) | W (Trp) | 2 (5.71%) | Y (Tyr) | 2 (5.71%) | V (Val) | 2 (5.71%) | ||
| Amino acid counting: | Total number of amino acids (aa): | 35 | Number of positively charged aa (Arg + Lys): | 2 | Number of negatively charged aa (Asp + Glu): | 3 | |||||||||||||
| Biochemical parameters: | Molecular weight [Da]: | 3613.05 | Theoretical pI: | 5.38 | Extinction coefficient: | ?4? | |||||||||||||
| Estimated half-life: | Mammals: | ?4 h? | Yeast: | ?4? | E. coli: | ?4? | |||||||||||||
| Codon usage: | Mammals: | ?good? | Yeast: | ?Ok? | E. coli: | ?bad ? | |||||||||||||
| RFC standard: | This is a RFC 25 BioBrick, thus ATGGCCGGC and ACCGGT were added to the 5' and 3' ends. | ||||||||||||||||||
| The BioBrick-AutoAnnotator was created by TU-Munich 2013 iGEM team. For information please read the description. | |||||||||||||||||||
