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Revision as of 20:59, 16 July 2013 (view source) ChristopherW (Talk | contribs) (→Sample Output) ← Older edit		Revision as of 21:19, 16 July 2013 (view source) ChristopherW (Talk | contribs) (→Sample Output) Newer edit →
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	|-		|-
	|colspan="2"|A (Ala)		|colspan="2"|A (Ala)
-	|colspan="2"|3 (6.12%)	+	|colspan="2"|5 (9.80%)
	|colspan="2"|R (Arg)		|colspan="2"|R (Arg)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|2 (3.92%)
	|colspan="2"|N (Asn)		|colspan="2"|N (Asn)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|2 (3.92%)
	|colspan="2"|D (Asp)		|colspan="2"|D (Asp)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|3 (5.88%)
	|colspan="2"|C (Cys)		|colspan="2"|C (Cys)
-	|colspan="2"|3 (6.12%)	+	|colspan="2"|2 (3.92%)
	|-		|-
	|colspan="2"|Q (Gln)		|colspan="2"|Q (Gln)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|3 (5.88%)
	|colspan="2"|E (Glu)		|colspan="2"|E (Glu)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|2 (3.92%)
	|colspan="2"|G (Gly)		|colspan="2"|G (Gly)
-	|colspan="2"|4 (8.16%)	+	|colspan="2"|2 (3.92%)
	|colspan="2"|H (His)		|colspan="2"|H (His)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|2 (3.92%)
	|colspan="2"|I (Ile)		|colspan="2"|I (Ile)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|3 (5.88%)
	|-		|-
	|colspan="2"|L (Leu)		|colspan="2"|L (Leu)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|3 (5.88%)
	|colspan="2"|K (Lys):		|colspan="2"|K (Lys):
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|4 (7.84%)
	|colspan="2"|M (Met)		|colspan="2"|M (Met)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|2 (3.92%)
	|colspan="2"|F (Phe)		|colspan="2"|F (Phe)
-	|colspan="2"|6 (12.24%)	+	|colspan="2"|2 (3.92%)
	|colspan="2"|P (Pro)		|colspan="2"|P (Pro)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|2 (3.92%)
	|-		|-
	|colspan="2"|S (Ser)		|colspan="2"|S (Ser)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|3 (5.88%)
	|colspan="2"|T (Thr)		|colspan="2"|T (Thr)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|2 (3.92%)
	|colspan="2"|W (Trp)		|colspan="2"|W (Trp)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|1 (1.96%)
	|colspan="2"|Y (Tyr)		|colspan="2"|Y (Tyr)
-	|colspan="2"|2 (4.08%)	+	|colspan="2"|4 (7.84%)
	|colspan="2"|V (Val)		|colspan="2"|V (Val)
-	|colspan="2"|3 (6.12%)	+	|colspan="2"|2 (3.92%)
	|-		|-
-	|colspan="3"|'''Amino acid counting:'''	+	|colspan="4"|'''Amino acid counting:'''
-	|colspan="3"|Total number of amino acids (aa):	+	|colspan="4"|Total number of amino acids (aa):
-	|colspan="2"|49	+	|colspan="2"|51
-	|colspan="3"|Number of positively charged aa (Arg + Lys):	+	|colspan="4"|Number of positively charged aa (Arg + Lys):
-	|colspan="2"|4	+	|colspan="2"|6
-	|colspan="3"|Number of negatively charged aa (Asp + Glu):	+	|colspan="4"|Number of negatively charged aa (Asp + Glu):
-	|colspan="2"|4	+	|colspan="2"|5
	|-		|-
-	|colspan="3"|'''Biochemical parameters:'''	+	|colspan="4"|'''Biochemical parameters:'''
-	|colspan="3"|Molecular weight [Da]:	+	|colspan="4"|Molecular weight [Da]:
-	|colspan="2"|5749.62	+	|colspan="2"|5939.80
-	|colspan="3"|Theoretical pI:	+	|colspan="4"|Theoretical pI:
-	|colspan="2"|6.93	+	|colspan="2"|8.00
-	|colspan="3"|Extinction coefficient:	+	|colspan="4"|Extinction coefficient:
	|colspan="2"|?4?		|colspan="2"|?4?
	|-		|-
-	|colspan="3"|'''Estimated half-life:'''	+	|colspan="4"|'''Estimated half-life:'''
-	|colspan="3"|Mammals:	+	|colspan="4"|Mammals:
	|colspan="2"|?4 h?		|colspan="2"|?4 h?
-	|colspan="3"|Yeast:	+	|colspan="4"|Yeast:
	|colspan="2"|?4?		|colspan="2"|?4?
-	|colspan="3"|''E. coli'':	+	|colspan="4"|''E. coli'':
	|colspan="2"|?4?		|colspan="2"|?4?
	|-		|-
-	|colspan="3"|'''Codon usage:'''	+	|colspan="4"|'''Codon usage:'''
-	|colspan="3"|Mammals:	+	|colspan="4"|Mammals:
	|colspan="2"|?good?		|colspan="2"|?good?
-	|colspan="3"|Yeast:	+	|colspan="4"|Yeast:
	|colspan="2"|?Ok?		|colspan="2"|?Ok?
-	|colspan="3"|''E. coli'':	+	|colspan="4"|''E. coli'':
	|colspan="2"|?bad ?		|colspan="2"|?bad ?
	|-		|-

---

Revision as of 21:19, 16 July 2013

Enter a sequence below!

Enter sequence!

Sample Output

Automatically determined parameters using the [http://www.mediawiki.org/wiki/Table BioBrick-AutoAnnotator]

BioBrick: BBa_K1159000

Used open reading frame from position ?x? to ?y?.

A (Ala)

5 (9.80%)

R (Arg)

2 (3.92%)

N (Asn)

2 (3.92%)

D (Asp)

3 (5.88%)

C (Cys)

2 (3.92%)

Q (Gln)

3 (5.88%)

E (Glu)

2 (3.92%)

G (Gly)

2 (3.92%)

H (His)

2 (3.92%)

I (Ile)

3 (5.88%)

L (Leu)

3 (5.88%)

K (Lys):

4 (7.84%)

M (Met)

2 (3.92%)

F (Phe)

2 (3.92%)

P (Pro)

2 (3.92%)

S (Ser)

3 (5.88%)

T (Thr)

2 (3.92%)

W (Trp)

1 (1.96%)

Y (Tyr)

4 (7.84%)

V (Val)

2 (3.92%)

Amino acid counting:

Total number of amino acids (aa):

51

Number of positively charged aa (Arg + Lys):

6

Number of negatively charged aa (Asp + Glu):

5

Biochemical parameters:

Molecular weight [Da]:

5939.80

Theoretical pI:

8.00

Extinction coefficient:

?4?

Estimated half-life:

Mammals:

?4 h?

Yeast:

?4?

E. coli:

?4?

Codon usage:

Mammals:

?good?

Yeast:

?Ok?

E. coli:

?bad ?

RFC standard:

This is a RFC 25 BioBrick, thus ATGGCCGGC and ACCGGT were added to the 5' and 3' ends.

The BioBrick-AutoAnnotator was created by TU-Munich 2013 iGEM team. For information please read the description.