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Introduction

Regulation of intracellular pH is important for the metabolism of a functional cell as it is tightly regulated by the complex interactions between the consuming, production, buffering and transport of H+ (Madshus 1988; Felle 1996). To maintain protein stability, enzyme and ion channel activity, growth and division, it is essential to retain pH within their physiological range of pH 7.5 (Bagar, Altenbach et al. 2009). In addition, it is important to maintain a proton gradient between the cytoplasm and mitochondria, which allow the formation of ATP to sustain their metabolism. Aspergillus niger is a GRAS organism that is among the favourites in producing organic acid as it can tolerate acidic environment. Since Aspergillus niger can produce high amount of organic acid, it would be interesting to investigate the fluctuation and difference in pH between the cytoplasm and mitochondria during the production of citric acid. This would be interesting to determine whether the pH, at a certain position in a filamentous fungi, is optimal for a certain reaction. This will allow us to direct and target a metabolic pathway into its appropriate compartments for optimal production. This will also allow us to elucidating the mechanism in how fast the homeostatic pH is being regulated when acid is production with extracellular acidic environment. Furthermore, the combination of pH-sensor with ATP-sensor will us to investigate in how the levels of ATP and H+ correlate together.

pHRed sensor

A novel approach in measuring intracellular pH in a non-invasive way has been developed by Mathew Tantama et. al. 2011, by using a recombinant fluorescent protein. By genetically engineer RFP mKeima into a S213A mutant, it can exhibits dual excitation peaks that respond ratiometrically well to pH changes (Tantama, Hung et al. 2011). This mutated mKeima is called pHRed, which has proven useful for monitoring and analyzing pH.

Strategy and Approach

To utilize pHRed for in vivo measurements of pH inside a filamentous fungi during citric acid production, two constructs were made. With one targeting into the cytoplasm and the other targeting into the mitochondrial by transforming fungi with a naked pHRed sensor and pHRed sensor fused with mitochondrial signal peptide, respectively. The mitochondrial signal peptide has been proven to target into the mitochondria of Asp. Niger (Blumhoff, Steiger et al. 2013). To measure pH, a calibration curve is established by purifying streptagII fused at N-terminus of pHRed proteins from sonificated E. coli, and is observed under a fluorescence microscope.

Research Aims

1. Make 2 contructs for targeting pHRed to cytoplasmic and mitochondrial compartments. 2. Purify strepTagII-pHRed from sonificated E. coli. and make a calibration curve. 3. Transform Aspergilllus niger with cytoplasmic pHRed and mitochondrial pHRed 4. Measure in vivo pH during citric acid production by Asp. Niger in time lapse using a fluorescence microscope

Results

After transformation of DH5α with 1µl of mixture (gibson assembly with pJet1.2 blunt vector), 7 colonies were picked and were cultured in 5 ml LB medium with ampicillin. Afterwards, plasmids were isolated using a miniprep kit (thermo scientific) according to their protocol using a homemade silicon column. Culture #1 till #3 were digested with pstI and notI; culture #4 till #7 were digested with nsiI and notI, see Figure 1.