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Team:UIUC Illinois/Project/Parts
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| - | CARDIOBIOTICS PARTS: <br> | + | <b>CARDIOBIOTICS PARTS: </b><br></p> |
| - | CDH <br> | + | <p class="left"> <b>CDH </b><br> |
- Derived from Pseudomonas Aeruginosa strain: PA01, this gene codes for Carnitine dehydrogenase that breaks down L-carnitine into 3-dehydrocarnitine. This enzyme directs the degradation down a pathway that prevents the formation of Trimethylamine. As previously mentioned Trimethylamine has been known to cause cardiovascular disease. This new pathway ultimately leads to glycine which is a nature substance in the body. This enzyme is the centerpiece of our experiment. <br> | - Derived from Pseudomonas Aeruginosa strain: PA01, this gene codes for Carnitine dehydrogenase that breaks down L-carnitine into 3-dehydrocarnitine. This enzyme directs the degradation down a pathway that prevents the formation of Trimethylamine. As previously mentioned Trimethylamine has been known to cause cardiovascular disease. This new pathway ultimately leads to glycine which is a nature substance in the body. This enzyme is the centerpiece of our experiment. <br> | ||
Characterization: <br> | Characterization: <br> | ||
Revision as of 02:23, 21 September 2013
CARDIOBIOTICS PARTS:
CDH
- Derived from Pseudomonas Aeruginosa strain: PA01, this gene codes for Carnitine dehydrogenase that breaks down L-carnitine into 3-dehydrocarnitine. This enzyme directs the degradation down a pathway that prevents the formation of Trimethylamine. As previously mentioned Trimethylamine has been known to cause cardiovascular disease. This new pathway ultimately leads to glycine which is a nature substance in the body. This enzyme is the centerpiece of our experiment.
Characterization:
- This part was characterized with an enzymatic assay.
CbcVW-
-From Pseudomonas Aeruginosa PA01
- Codes for a membrane bound protein that allows for the transport of L-carnitine into the cell.
- This is crucial to our project because if we want to implement this as a system we need the cell to have the ability to uptake an excess of L-carnitine.
- Proof of functionality: LCMS Assay
Characterization:
Proof of functionality: LCMS
CaiX
-From Pseudomonas Aeruginosa PA01
- Codes for a transport protein that allows for L-carnitine to be directed to the membrane bound channel to then be transported into the cell.
- This is crucial to our project because if we want to implement this as a system we need the cell to have the ability to uptake an excess of L-carnitine.
- Proof of functionality: LCMS Assay
Characterization:
Proof of functionality: LCMS
CbcX:
-From Pseudomonas Aeruginosa PA01
- Codes for a transport protien that takes Choline to a transport channel to increase rate of Choline uptake.
- This is useful to our project because Choline is also a compound that can be degraded to TMA. If we also modified its degredation our probiotic would be even more effective at decreases CVD. This gene would help increase uptake to maximize our probiotics effectiveness.
