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Team:Osaka/Modeling
From 2013.igem.org
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<p class="iwakiri">In the equation on the picture , A means the number of type A-Ecoli , B means the number of type B-Ecoli , </p> | <p class="iwakiri">In the equation on the picture , A means the number of type A-Ecoli , B means the number of type B-Ecoli , </p> | ||
<p class="iwakiri">and N means the concentration of nutrition.</p> | <p class="iwakiri">and N means the concentration of nutrition.</p> | ||
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| + | <div style="width:100%; height:500px;"> | ||
| + | <img src="https://static.igem.org/mediawiki/2013/0/0d/Siki.jpg" style="position:absolute; width:600px; top:500px; left:50%; margin-left:-300px;"> | ||
| + | </div> | ||
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<p class="iwakiri">The first partial differential equation of A has 3 factors.</p> | <p class="iwakiri">The first partial differential equation of A has 3 factors.</p> | ||
<p class="iwakiri">The first one is the diffusion of A , the second one is the growth of A , </p> | <p class="iwakiri">The first one is the diffusion of A , the second one is the growth of A , </p> | ||
| - | <p class="iwakiri">and the third one is the transition from A to B. The transition happens only when N | + | <p class="iwakiri">and the third one is the transition from A to B. The transition happens only when N is smaller than No.</p> |
| - | <p class="iwakiri"> | + | <p class="iwakiri">The second partial differential equation of B has 2 factors.</p> |
<p class="iwakiri">The first one is the diffusion of B , and the second one is the transition from A to B.</p> | <p class="iwakiri">The first one is the diffusion of B , and the second one is the transition from A to B.</p> | ||
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<p class="iwakiri">We show several patterns that we got from the simulations below.</p> | <p class="iwakiri">We show several patterns that we got from the simulations below.</p> | ||
| - | <p class="iwakiri">The gif files show how the number of A type bacterias(Z- | + | <p class="iwakiri">The gif files show how the number of A type bacterias(Z-axis) develop in 2D area(X-Y plate).</p> |
</div> | </div> | ||
</div> | </div> | ||
Revision as of 01:48, 28 September 2013
Syuichi Iwakiri built differential equations to describe the movement of E.coli and nutrition.
And Hiroki Nishiyama did simulations of the equations.
In the equation on the picture , A means the number of type A-Ecoli , B means the number of type B-Ecoli ,
and N means the concentration of nutrition.
The first partial differential equation of A has 3 factors.
The first one is the diffusion of A , the second one is the growth of A ,
and the third one is the transition from A to B. The transition happens only when N is smaller than No.
The second partial differential equation of B has 2 factors.
The first one is the diffusion of B , and the second one is the transition from A to B.
The third partial differential equation of N has 3 factors.
The first one is the diffusion of N , and the second one is the consume by A ,
the third one is the virtual consume by B (b is the consume rate and c is the produce rate).
The Theory Group have discovered a unique patterns ,
for example , a fractal pattern and cross-like pattern.
We show several patterns that we got from the simulations below.
The gif files show how the number of A type bacterias(Z-axis) develop in 2D area(X-Y plate).
