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Team:HokkaidoU Japan/Notebook/Promoter oripro(K1084007)-B0034-lacZ-B0015
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(Difference between revisions)
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<li class="step"> <div class="step-tile"> <h2 class="step-title">Ligation(over night)</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Tue Mar 5, Fri Mar 8</time> </li> </ul> <div class="step-recipe"> Ligate K1084007 with I732020<br> Ligate R0040 with I732020(PCR product) </div> </div> </div> </li> | <li class="step"> <div class="step-tile"> <h2 class="step-title">Ligation(over night)</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Tue Mar 5, Fri Mar 8</time> </li> </ul> <div class="step-recipe"> Ligate K1084007 with I732020<br> Ligate R0040 with I732020(PCR product) </div> </div> </div> </li> | ||
<li class="step"> <div class="step-tile"> <h2 class="step-title">Transformation</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Wed Mar 6, Sat Mar 9</time> </li> </ul> <div class="step-recipe"> K1084007-B0034-LacZα-B0015 on pSB1AK3<br> 5µL DNA to DH5α<br><br> R0040-B0034-LacZα-B0015 on pSB1A2<br> 5µL DNA to DH5α </div> </div> </div> </li> | <li class="step"> <div class="step-tile"> <h2 class="step-title">Transformation</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Wed Mar 6, Sat Mar 9</time> </li> </ul> <div class="step-recipe"> K1084007-B0034-LacZα-B0015 on pSB1AK3<br> 5µL DNA to DH5α<br><br> R0040-B0034-LacZα-B0015 on pSB1A2<br> 5µL DNA to DH5α </div> </div> </div> </li> | ||
| - | <li class="step"> <div class="step-tile"> <h2 class="step-title">Colony PCR</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Thu Mar 7, Sun Mar 10</time> </li> </ul> <div class="step-recipe"> | + | <li class="step"> <div class="step-tile"> <h2 class="step-title">Colony PCR</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Thu Mar 7, Sun Mar 10</time> </li> </ul> <div class="step-recipe"> </div> </div> </div> </li> |
<li class="step"> <div class="step-tile"> <h2 class="step-title">Mini-prep</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Fri Mar 8, Mon Mar 11</time> </li> </ul> <div class="step-recipe"> K1084007-B0034-LacZα-B0015 on pSB1AK3<br> R0040-B0034-LacZα-B0015 on pSB1A2 </div> </div> </div> </li> | <li class="step"> <div class="step-tile"> <h2 class="step-title">Mini-prep</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Fri Mar 8, Mon Mar 11</time> </li> </ul> <div class="step-recipe"> K1084007-B0034-LacZα-B0015 on pSB1AK3<br> R0040-B0034-LacZα-B0015 on pSB1A2 </div> </div> </div> </li> | ||
<li class="step"> <div class="step-tile"> <h2 class="step-title">Culture</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Mon Mar 11</time> </li> </ul> <div class="step-recipe"> K1084007-B0034-LacZα-B0015 on pSB1AK3<br> R0040-B0034-LacZα-B0015 on pSB1A2<br> (Add X-Gal to confirm β-galactosidase activity)<br><br> X-Gal 50 mg<br> dimethylformamid 1 mL <br> (50 mg/mL)<br> <br> Diluted the X-gal stock 1 to 1 with DW<br> Pipetted 50 uL of this dilution onto the plate<br> Evenly distributed the solution onto the plate using a spreader<br> Dried for 30 min at 37C<br> Streaked these colonies as "single colony isolation" on each LBA plate </div> </div> </div> </li> | <li class="step"> <div class="step-tile"> <h2 class="step-title">Culture</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Mon Mar 11</time> </li> </ul> <div class="step-recipe"> K1084007-B0034-LacZα-B0015 on pSB1AK3<br> R0040-B0034-LacZα-B0015 on pSB1A2<br> (Add X-Gal to confirm β-galactosidase activity)<br><br> X-Gal 50 mg<br> dimethylformamid 1 mL <br> (50 mg/mL)<br> <br> Diluted the X-gal stock 1 to 1 with DW<br> Pipetted 50 uL of this dilution onto the plate<br> Evenly distributed the solution onto the plate using a spreader<br> Dried for 30 min at 37C<br> Streaked these colonies as "single colony isolation" on each LBA plate </div> </div> </div> </li> | ||
Latest revision as of 03:10, 28 September 2013
Maestro E.coli
Notebook
oripro(K1084007)-B0034-lacZ-B0015
-
Start
-
Synthesize oripro
Anneal ut-tg-oripro(K1084007)-f and ut-tg-oripro(K1084007)-r -
Culture
pSB1C3 -
EtOH precipitation
K1084007 -
Culture
I732020 -
Mini-prep
pSB1C3, I732020 -
PCR & Gel extraction
I732020
100b up, 200b dn, KOD plus NEO -
Digestion & Gel extraction
Cut pSB1C3 with EcoRI, SpeI (using 10xH buffer) -
EtOH precipitation
pSB1C3 -
Ligation
Ligate pSB1C3 with K1084007 -
Transformation
K1084007 on pSB1C3
5µL DNA to DH5α -
Colony PCR
K1084007 on pSB1C3 -
Mini-prep
K1084007 on pSB1C3 -
PCR for Sequencing
I1084007
100b up, 200b dn -
EtOH for Sequencing
I1084007 -
Sequencing
K1084007 -
Digestion & Gel extraction
Cut I732020 with SpeI, XbaI (using 10xM buffer)
Cut R0040 with SpeI, PstI (using 10xH buffer)
Cut I732020(PCR product) with XbaI, PstI (using 10xM buffer) -
EtOH precipitation
I732020, R0040, I732020(PCR product) -
Ligation(over night)
Ligate K1084007 with I732020
Ligate R0040 with I732020(PCR product) -
Transformation
K1084007-B0034-LacZα-B0015 on pSB1AK3
5µL DNA to DH5α
R0040-B0034-LacZα-B0015 on pSB1A2
5µL DNA to DH5α -
Colony PCR
-
Mini-prep
K1084007-B0034-LacZα-B0015 on pSB1AK3
R0040-B0034-LacZα-B0015 on pSB1A2 -
Culture
K1084007-B0034-LacZα-B0015 on pSB1AK3
R0040-B0034-LacZα-B0015 on pSB1A2
(Add X-Gal to confirm β-galactosidase activity)
X-Gal 50 mg
dimethylformamid 1 mL
(50 mg/mL)
Diluted the X-gal stock 1 to 1 with DW
Pipetted 50 uL of this dilution onto the plate
Evenly distributed the solution onto the plate using a spreader
Dried for 30 min at 37C
Streaked these colonies as "single colony isolation" on each LBA plate -
PCR for Sequencing
K1084007, K1084007-B0034-lacZα-B0015
100b up, 200b dn -
EtOH for Sequencing
K1084007, K1084007-B0034-lacZα-B0015 -
Sequencing
K1084007, K1084007-B0034-lacZα-B0015 -
Culture for assay
K1084007-B0034-lacZα-B0015 on pSB1AK3
R0040-B0034-lacZα-B0015 on pSB1A2
NC:K1084007 on pSB1C3 -
β-galactosidase assay
K1084007-B0034-lacZα-B0015 on pSB1AK3
R0040-B0034-lacZα-B0015 on pSB1A2 -
Digestion & Gel extraction
Cut I732020 with EcoRI, XbaI (using 10xM buffer)
Cut K184007 with EcoRI, SpeI (using 10xH buffer) -
EtOH precipitation
I732020, K1084007 -
Culture
R0040-B0034-mcherry-B0015 on pSB1A2
K1084007 on pSB1C3 -
Mini-prep
R0040-B0034-mcherry-B0015 on pSB1A2
K1084007 on pSB1C3 -
Digestion & Gel extraction
Cut K1084007- B0034-lacZα-B0015 with XbaI, PstI (using 10xM buffer)
Cut K1084007 with XbaI, PstI (using 10xM buffer)
Cut R0040 with XbaI, PstI (using 10xM buffer) -
EtOH precipitation
K1084007-B0034-lacZα-B0015
K1084007
R0040-B0034-mcherry-B0015 -
Ligation
Ligate K1084007-B0034-lacZα-B0015 with pSB1A2
Ligate K1084007-B0034-lacZα-B0015 with pSB1C3 -
Transformation
K1084007-B0034-lacZα-B0015 on pSB1A2
K1084007-B0034-lacZα-B0015 on pSB1C3
5µL DNA to DH5α -
Culture for assay
K1084007-B0034-lacZα-B0015 on pSB1AK3
R0040-B0034-lacZα-B0015 on pSB1A2
NC:K1084007 on pSB1C3 -
β-galactosidase assay
K1084007-B0034-lacZα-B0015 on pSB1AK3
R0040-B0034-lacZα-B0015 on pSB1A2
NC:K1084007 on pSB1C3 -
Complete!
