"
User:ChristopherW
From 2013.igem.org
(Difference between revisions)
ChristopherW (Talk | contribs) (→Sample Output) |
ChristopherW (Talk | contribs) (→Sample Output) |
||
| Line 31: | Line 31: | ||
|- | |- | ||
|A (Ala) | |A (Ala) | ||
| - | | | + | |4 (10.53%) |
|R (Arg) | |R (Arg) | ||
| - | | | + | |1 (2.63%) |
|N (Asn) | |N (Asn) | ||
| - | | | + | |3 (7.89%) |
|D (Asp) | |D (Asp) | ||
| - | | | + | |1 (2.63%) |
|C (Cys) | |C (Cys) | ||
| - | |1 (2. | + | |1 (2.63%) |
| + | |- | ||
|Q (Gln) | |Q (Gln) | ||
| - | |2 (5. | + | |2 (5.26%) |
|E (Glu) | |E (Glu) | ||
| - | | | + | |4 (10.53%) |
|G (Gly) | |G (Gly) | ||
| - | |1 (2. | + | |1 (2.63%) |
|H (His) | |H (His) | ||
| - | |1 (2. | + | |2 (5.26%) |
| + | |I (Ile) | ||
| + | |1 (2.63%) | ||
|- | |- | ||
| + | |L (Leu) | ||
| + | |3 (7.89%) | ||
|K (Lys): | |K (Lys): | ||
| - | |2 (5. | + | |2 (5.26%) |
|M (Met) | |M (Met) | ||
| - | |2 (5. | + | |2 (5.26%) |
|F (Phe) | |F (Phe) | ||
| - | | | + | |1 (2.63%) |
|P (Pro) | |P (Pro) | ||
| - | |2 (5. | + | |2 (5.26%) |
| + | |- | ||
|S (Ser) | |S (Ser) | ||
| - | |3 ( | + | |3 (7.89%) |
|T (Thr) | |T (Thr) | ||
| - | | | + | |1 (2.63%) |
|W (Trp) | |W (Trp) | ||
| - | |2 (5. | + | |2 (5.26%) |
|Y (Tyr) | |Y (Tyr) | ||
| - | | | + | |1 (2.63%) |
|V (Val) | |V (Val) | ||
| - | | | + | |1 (2.63%) |
|- | |- | ||
|colspan="3"|'''Amino acid counting:''' | |colspan="3"|'''Amino acid counting:''' | ||
|colspan="3"|Total number of amino acids (aa): | |colspan="3"|Total number of amino acids (aa): | ||
| - | |colspan="2"| | + | |colspan="2"|38 |
|colspan="3"|Number of positively charged aa (Arg + Lys): | |colspan="3"|Number of positively charged aa (Arg + Lys): | ||
| - | |||
| - | |||
|colspan="2"|3 | |colspan="2"|3 | ||
| + | |colspan="3"|Number of negatively charged aa (Asp + Glu): | ||
| + | |colspan="2"|5 | ||
|- | |- | ||
|colspan="3"|'''Biochemical parameters:''' | |colspan="3"|'''Biochemical parameters:''' | ||
|colspan="3"|Molecular weight [Da]: | |colspan="3"|Molecular weight [Da]: | ||
| - | |colspan="2"| | + | |colspan="2"|4432.97 |
|colspan="3"|Theoretical pI: | |colspan="3"|Theoretical pI: | ||
| - | |colspan="2"|5. | + | |colspan="2"|5.42 |
|colspan="3"|Extinction coefficient: | |colspan="3"|Extinction coefficient: | ||
|colspan="2"|?4? | |colspan="2"|?4? | ||
Revision as of 20:29, 16 July 2013
Enter a sequence below!
Enter sequence!
Sample Output
| Automatically determined parameters using the [http://www.mediawiki.org/wiki/Table BioBrick-AutoAnnotator] | |||||||||||||||||||
| BioBrick: BBa_K1159000 | Used open reading frame from position ?x? to ?y?. | ||||||||||||||||||
| A (Ala) | 4 (10.53%) | R (Arg) | 1 (2.63%) | N (Asn) | 3 (7.89%) | D (Asp) | 1 (2.63%) | C (Cys) | 1 (2.63%) | ||||||||||
| Q (Gln) | 2 (5.26%) | E (Glu) | 4 (10.53%) | G (Gly) | 1 (2.63%) | H (His) | 2 (5.26%) | I (Ile) | 1 (2.63%) | ||||||||||
| L (Leu) | 3 (7.89%) | K (Lys): | 2 (5.26%) | M (Met) | 2 (5.26%) | F (Phe) | 1 (2.63%) | P (Pro) | 2 (5.26%) | ||||||||||
| S (Ser) | 3 (7.89%) | T (Thr) | 1 (2.63%) | W (Trp) | 2 (5.26%) | Y (Tyr) | 1 (2.63%) | V (Val) | 1 (2.63%) | ||||||||||
| Amino acid counting: | Total number of amino acids (aa): | 38 | Number of positively charged aa (Arg + Lys): | 3 | Number of negatively charged aa (Asp + Glu): | 5 | |||||||||||||
| Biochemical parameters: | Molecular weight [Da]: | 4432.97 | Theoretical pI: | 5.42 | Extinction coefficient: | ?4? | |||||||||||||
| Estimated half-life: | Mammals: | ?4 h? | Yeast: | ?4? | E. coli: | ?4? | |||||||||||||
| Codon usage: | Mammals: | ?good? | Yeast: | ?Ok? | E. coli: | ?bad ? | |||||||||||||
| RFC standard: | This is a RFC 25 BioBrick, thus ATGGCCGGC and ACCGGT were added to the 5' and 3' ends. | ||||||||||||||||||
| The BioBrick-AutoAnnotator was created by TU-Munich 2013 iGEM team. For information please read the description. | |||||||||||||||||||
