User:ChristopherW

From 2013.igem.org

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(→Sample Output)
(→Sample Output)
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|-
|-
|colspan="2"|A (Ala)
|colspan="2"|A (Ala)
-
|colspan="2"|4 (10.53%)
+
|4 (7.02%)
|colspan="2"|R (Arg)
|colspan="2"|R (Arg)
-
|colspan="2"|1 (2.63%)
+
|2 (3.51%)
|colspan="2"|N (Asn)
|colspan="2"|N (Asn)
-
|colspan="2"|3 (7.89%)
+
|3 (5.26%)
|colspan="2"|D (Asp)
|colspan="2"|D (Asp)
-
|colspan="2"|1 (2.63%)
+
|4 (7.02%)
|colspan="2"|C (Cys)
|colspan="2"|C (Cys)
-
|colspan="2"|1 (2.63%)
+
|4 (7.02%)
|-
|-
-
|Q (Gln)
+
|colspan="2"|Q (Gln)
-
|2 (5.26%)
+
|2 (3.51%)
-
|E (Glu)
+
|colspan="2"|E (Glu)
-
|4 (10.53%)
+
|2 (3.51%)
-
|G (Gly)
+
|colspan="2"|G (Gly)
-
|1 (2.63%)
+
|4 (7.02%)
-
|H (His)
+
|colspan="2"|H (His)
-
|2 (5.26%)
+
|3 (5.26%)
-
|I (Ile)
+
|colspan="2"|I (Ile)
-
|1 (2.63%)
+
|3 (5.26%)
|-
|-
-
|L (Leu)
+
|colspan="2"|L (Leu)
-
|3 (7.89%)
+
|3 (5.26%)
-
|K (Lys):
+
|colspan="2"|K (Lys):
-
|2 (5.26%)
+
|3 (5.26%)
-
|M (Met)
+
|colspan="2"|M (Met)
-
|2 (5.26%)
+
|3 (5.26%)
-
|F (Phe)
+
|colspan="2"|F (Phe)
-
|1 (2.63%)
+
|1 (1.75%)
-
|P (Pro)
+
|colspan="2"|P (Pro)
-
|2 (5.26%)
+
|2 (3.51%)
|-
|-
-
|S (Ser)
+
|colspan="2"|S (Ser)
-
|3 (7.89%)
+
|4 (7.02%)
-
|T (Thr)
+
|colspan="2"|T (Thr)
-
|1 (2.63%)
+
|1 (1.75%)
-
|W (Trp)
+
|colspan="2"|W (Trp)
-
|2 (5.26%)
+
|3 (5.26%)
-
|Y (Tyr)
+
|colspan="2"|Y (Tyr)
-
|1 (2.63%)
+
|3 (5.26%)
-
|V (Val)
+
|colspan="2"|V (Val)
-
|1 (2.63%)
+
|3 (5.26%)
|-
|-
|colspan="3"|'''Amino acid counting:'''
|colspan="3"|'''Amino acid counting:'''
|colspan="3"|Total number of amino acids (aa):
|colspan="3"|Total number of amino acids (aa):
-
|colspan="2"|38
+
|colspan="2"|57
|colspan="3"|Number of positively charged aa (Arg + Lys):
|colspan="3"|Number of positively charged aa (Arg + Lys):
-
|colspan="2"|3
 
-
|colspan="3"|Number of negatively charged aa (Asp + Glu):
 
|colspan="2"|5
|colspan="2"|5
 +
|colspan="3"|Number of negatively charged aa (Asp + Glu):
 +
|colspan="2"|6
|-
|-
|colspan="3"|'''Biochemical parameters:'''
|colspan="3"|'''Biochemical parameters:'''
|colspan="3"|Molecular weight [Da]:
|colspan="3"|Molecular weight [Da]:
-
|colspan="2"|4432.97
+
|colspan="2"|6577.50
|colspan="3"|Theoretical pI:
|colspan="3"|Theoretical pI:
-
|colspan="2"|5.42
+
|colspan="2"|6.28
|colspan="3"|Extinction coefficient:
|colspan="3"|Extinction coefficient:
|colspan="2"|?4?
|colspan="2"|?4?

Revision as of 20:36, 16 July 2013

AutoAnnotator by Team TU-Munich 2013

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Sample Output

Automatically determined parameters using the [http://www.mediawiki.org/wiki/Table BioBrick-AutoAnnotator]
BioBrick: BBa_K1159000 Used open reading frame from position ?x? to ?y?.
A (Ala) 4 (7.02%) R (Arg) 2 (3.51%) N (Asn) 3 (5.26%) D (Asp) 4 (7.02%) C (Cys) 4 (7.02%)
Q (Gln) 2 (3.51%) E (Glu) 2 (3.51%) G (Gly) 4 (7.02%) H (His) 3 (5.26%) I (Ile) 3 (5.26%)
L (Leu) 3 (5.26%) K (Lys): 3 (5.26%) M (Met) 3 (5.26%) F (Phe) 1 (1.75%) P (Pro) 2 (3.51%)
S (Ser) 4 (7.02%) T (Thr) 1 (1.75%) W (Trp) 3 (5.26%) Y (Tyr) 3 (5.26%) V (Val) 3 (5.26%)
Amino acid counting: Total number of amino acids (aa): 57 Number of positively charged aa (Arg + Lys): 5 Number of negatively charged aa (Asp + Glu): 6
Biochemical parameters: Molecular weight [Da]: 6577.50 Theoretical pI: 6.28 Extinction coefficient: ?4?
Estimated half-life: Mammals: ?4 h? Yeast: ?4? E. coli: ?4?
Codon usage: Mammals: ?good? Yeast: ?Ok? E. coli: ?bad ?
RFC standard: This is a RFC 25 BioBrick, thus ATGGCCGGC and ACCGGT were added to the 5' and 3' ends.
The BioBrick-AutoAnnotator was created by TU-Munich 2013 iGEM team. For information please read the description.
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