Team:BYU Provo/Notebook/SmallPhage/Springexp/Period1/Dailylog

From 2013.igem.org

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'''5/1/13'''
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| colspan="3" | <font color="#333399" size="5" font face="Calibri"> '''Small Phage Spring Notebook: April 29 - May 12 Daily Log'''</font>
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Overview
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[[Team:BYU Provo/Notebook/SmallPhage/Winterexp|Winter]]
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[[Team:BYU Provo/Notebook/SmallPhage/Springexp|Spring]]
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[[Team:BYU Provo/Notebook/SmallPhage/Summerexp|Summer]]
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[[Team:BYU Provo/Notebook/SmallPhage/Fallexp|Fall]]
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<font size="4"> '''5/1/13''' </font>
- Commencement of spring!!!
- Commencement of spring!!!
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- Discussed goals and outlined plans for spring term
- Discussed goals and outlined plans for spring term
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'''5/2/13'''
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<font size="4"> '''5/2/13''' </font>
- Designed primers for amplifying and sequencing phage capsid protein
- Designed primers for amplifying and sequencing phage capsid protein
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- Wrote emails inquiring mutagen (NG) and plasmid for in vitro assembly
- Wrote emails inquiring mutagen (NG) and plasmid for in vitro assembly
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'''5/3/13'''
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<font size="4"> '''5/3/13''' </font>
- Performed agar test, focusing primarily on ×8
- Performed agar test, focusing primarily on ×8
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: [[Team:BYU_Provo/Notebook/SmallPhage/Springexp/Period1/Exp/Team:BYU_Provo/5.3 Phage Amplification/Purification|5.3 T7 phage amplification/purification]]
: [[Team:BYU_Provo/Notebook/SmallPhage/Springexp/Period1/Exp/Team:BYU_Provo/5.3 Phage Amplification/Purification|5.3 T7 phage amplification/purification]]
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'''5/4/13'''
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<font size="4"> '''5/4/13''' </font>
- Performed dilution series using stock 5.3 (-1 through -11)
- Performed dilution series using stock 5.3 (-1 through -11)
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- Started two 5mL overnights of BL21
- Started two 5mL overnights of BL21
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'''5/5/13'''
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<font size="4"> '''5/5/13''' </font>
- Spot test using stock 5.3 and its dilution series (from 5.4)
- Spot test using stock 5.3 and its dilution series (from 5.4)
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: [[5.5 Amplification from a plaque test]]
: [[5.5 Amplification from a plaque test]]
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'''5/6/13'''
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<font size="4"> '''5/6/13''' </font>
- Continued [[5.3 T7 phage amplification/purification]]
- Continued [[5.3 T7 phage amplification/purification]]
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: [[5.6 T7+ Liquid Culture Phage Concentration Test]]
: [[5.6 T7+ Liquid Culture Phage Concentration Test]]
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'''5/7/13'''
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<font size="4"> '''5/7/13''' </font>
- Started two 5mL of E coli BL21 overnight
- Started two 5mL of E coli BL21 overnight
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- Designed procedure for applying mutagen and selecting for T7
- Designed procedure for applying mutagen and selecting for T7
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'''5/8/13'''
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<font size="4"> '''5/8/13''' </font>
- Went over procedure for applying mutagen and PCR with Dr. Grose
- Went over procedure for applying mutagen and PCR with Dr. Grose
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- Learned how to create LB plates
- Learned how to create LB plates
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'''5/9/13'''
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<font size="4"> '''5/9/13''' </font>
- Practiced with ×6 and ×8 top agar
- Practiced with ×6 and ×8 top agar
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- Discussed plans and schedule for next week.
- Discussed plans and schedule for next week.
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Revision as of 15:55, 27 May 2013


Small Phage Spring Notebook: April 29 - May 12 Daily Log



Overview

Winter

Spring

Summer

Fall

5/1/13

- Commencement of spring!!!

- Discussed goals and outlined plans for spring term


5/2/13

- Designed primers for amplifying and sequencing phage capsid protein

- Wrote emails inquiring mutagen (NG) and plasmid for in vitro assembly


5/3/13

- Performed agar test, focusing primarily on ×8

5.3 T7 phage selection method test

- Processed phage amplification

5.3 T7 phage amplification/purification


5/4/13

- Performed dilution series using stock 5.3 (-1 through -11)

- Started two 5mL overnights of BL21


5/5/13

- Spot test using stock 5.3 and its dilution series (from 5.4)

|5.3 T7 phage amplification/purification

- Started liquid culture for purification team (at around noon)

1mL of BL21 overnight + 4mL of LB + 100μL -2 phage (received stock)

- Started 5.5 amplification from a plaque test

5.5 Amplification from a plaque test


5/6/13

- Continued 5.3 T7 phage amplification/purification

- Performed liquid culture phage concentration test

5.6 T7+ Liquid Culture Phage Concentration Test


5/7/13

- Started two 5mL of E coli BL21 overnight

- Designed procedure for applying mutagen and selecting for T7


5/8/13

- Went over procedure for applying mutagen and PCR with Dr. Grose

- Performed spot tests under 5.6 T7+ Liquid Culture Phage Concentration Test

- Started two 5mL BL21 overnights

- Learned how to create LB plates


5/9/13

- Practiced with ×6 and ×8 top agar

5.9 T7 selection method test #2

- Started 5.9 T7+ Liquid Culture Phage Concentration Test #2

- Discussed plans and schedule for next week.