User:ChristopherW

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AutoAnnotator by Team TU-Munich 2013

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Sample Output

Automatically determined parameters using the [http://www.mediawiki.org/wiki/Table BioBrick-AutoAnnotator]
BioBrick: BBa_K1159000 Used open reading frame from position ?x? to ?y?.
A (Ala) 4 (10.53%) R (Arg) 1 (2.63%) N (Asn) 3 (7.89%) D (Asp) 1 (2.63%) C (Cys) 1 (2.63%)
Q (Gln) 2 (5.26%) E (Glu) 4 (10.53%) G (Gly) 1 (2.63%) H (His) 2 (5.26%) I (Ile) 1 (2.63%)
L (Leu) 3 (7.89%) K (Lys): 2 (5.26%) M (Met) 2 (5.26%) F (Phe) 1 (2.63%) P (Pro) 2 (5.26%)
S (Ser) 3 (7.89%) T (Thr) 1 (2.63%) W (Trp) 2 (5.26%) Y (Tyr) 1 (2.63%) V (Val) 1 (2.63%)
Amino acid counting: Total number of amino acids (aa): 38 Number of positively charged aa (Arg + Lys): 3 Number of negatively charged aa (Asp + Glu): 5
Biochemical parameters: Molecular weight [Da]: 4432.97 Theoretical pI: 5.42 Extinction coefficient: ?4?
Estimated half-life: Mammals: ?4 h? Yeast: ?4? E. coli: ?4?
Codon usage: Mammals: ?good? Yeast: ?Ok? E. coli: ?bad ?
RFC standard: This is a RFC 25 BioBrick, thus ATGGCCGGC and ACCGGT were added to the 5' and 3' ends.
The BioBrick-AutoAnnotator was created by TU-Munich 2013 iGEM team. For information please read the description.