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From 2013.igem.org

Software Notebook

This notebook contains our work on various software projects, including Eugene and the Data Sheet App.

Goal: Use and develop various Clotho apps to make experiments more efficient

Subgoals:

• Use Eugene to find permutations of circuits
• Develop data sheet app that will organize information for parts in the registry
• Make app compatible with Clotho 3.0

Eugene - June 18, 2013

We met with Ernst and Diana from the Eugene team. We now have access to the newest Clotho releases through the SVN, and Ernst created a dynamic naming system in the Eugene language so users can use for loops to name parts that have consecutive numbering systems. We are working on a PCDs eugene file, and trying to make an inverter example. We have been also populating a database in Clotho with the parts and their sequences. This was started with a file Sonya had provided at the Eugene tutorial meeting, and we are filling out the sequences from the iGEM registry and from lab members sequencing files.

Data Sheet App - July 2, 2013

Today we met with Swapnil, Evan, and Jenhan to discuss the data sheet app. We discussed what fields on the data sheet should be auto generated, user input, and drop down menus.