Team:Manchester/Enzyme
From 2013.igem.org
To His-tag or not to His-tag
Now that βHACdH is ready to undergo simulations, we ran a simulation for 1 ns under the notion that we would be able to visualize motions around the N- and C-Terminals during the course of the simulation and therefore determine, which terminal would be more appropriate to add His-tags to. The conclusion for our simulation was that the N-Terminal is ideal for the addition of His-tags for several reasons. Firstly, the C-terminal is localized in close vicinity to the interaction domain of the βHACdH homodimer, therefore the addition of His-tags could possibly interfere with the dimer interaction[6]. Our model also shows that the C-terminal is more dynamic compared to the N-terminal and there are several times in the simulation that the C-terminal interacts with the dimerization domain and may interfere with the folding and function of the protein[4][5][6]. Therefore we concluded that the N-terminal would be ideal to add the His-tags to, as the N-terminal is less dynamic and will be less likely to interfere with folding and the protein function. With this in mind, our experimental team began to design the His-tagged FabA BioBrick (BBa_K1027003) to express a N-Terminal His-tagged βHACdH to use in the characterisation of βHACdH overexpression.