User:ChristopherW

From 2013.igem.org

Revision as of 20:59, 16 July 2013 by ChristopherW (Talk | contribs)

AutoAnnotator by Team TU-Munich 2013

Enter a sequence below!

Enter sequence!



Sample Output

Automatically determined parameters using the [http://www.mediawiki.org/wiki/Table BioBrick-AutoAnnotator]
BioBrick: BBa_K1159000 Used open reading frame from position ?x? to ?y?.
A (Ala) 3 (6.12%) R (Arg) 2 (4.08%) N (Asn) 2 (4.08%) D (Asp) 2 (4.08%) C (Cys) 3 (6.12%)
Q (Gln) 2 (4.08%) E (Glu) 2 (4.08%) G (Gly) 4 (8.16%) H (His) 2 (4.08%) I (Ile) 2 (4.08%)
L (Leu) 2 (4.08%) K (Lys): 2 (4.08%) M (Met) 2 (4.08%) F (Phe) 6 (12.24%) P (Pro) 2 (4.08%)
S (Ser) 2 (4.08%) T (Thr) 2 (4.08%) W (Trp) 2 (4.08%) Y (Tyr) 2 (4.08%) V (Val) 3 (6.12%)
Amino acid counting: Total number of amino acids (aa): 49 Number of positively charged aa (Arg + Lys): 4 Number of negatively charged aa (Asp + Glu): 4
Biochemical parameters: Molecular weight [Da]: 5749.62 Theoretical pI: 6.93 Extinction coefficient: ?4?
Estimated half-life: Mammals: ?4 h? Yeast: ?4? E. coli: ?4?
Codon usage: Mammals: ?good? Yeast: ?Ok? E. coli: ?bad ?
RFC standard: This is a RFC 25 BioBrick, thus ATGGCCGGC and ACCGGT were added to the 5' and 3' ends.
The BioBrick-AutoAnnotator was created by TU-Munich 2013 iGEM team. For information please read the description.