User:ChristopherW

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AutoAnnotator by Team TU-Munich 2013

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Sample Output

Automatically determined parameters using the [http://www.mediawiki.org/wiki/Table BioBrick-AutoAnnotator]
BioBrick: BBa_K1159000 Used open reading frame from position ?x? to ?y?.
A (Ala) 5 (9.80%) R (Arg) 2 (3.92%) N (Asn) 2 (3.92%) D (Asp) 3 (5.88%) C (Cys) 2 (3.92%)
Q (Gln) 3 (5.88%) E (Glu) 2 (3.92%) G (Gly) 2 (3.92%) H (His) 2 (3.92%) I (Ile) 3 (5.88%)
L (Leu) 3 (5.88%) K (Lys): 4 (7.84%) M (Met) 2 (3.92%) F (Phe) 2 (3.92%) P (Pro) 2 (3.92%)
S (Ser) 3 (5.88%) T (Thr) 2 (3.92%) W (Trp) 1 (1.96%) Y (Tyr) 4 (7.84%) V (Val) 2 (3.92%)
Amino acid counting: Total number of amino acids (aa): 51 Number of positively charged aa (Arg + Lys): 6 Number of negatively charged aa (Asp + Glu): 5
Biochemical parameters: Molecular weight [Da]: 5939.80 Theoretical pI: 8.00 Extinction coefficient: ?4?
Estimated half-life: Mammals: ?4 h? Yeast: ?4? E. coli: ?4?
Codon usage: Mammals: ?good? Yeast: ?Ok? E. coli: ?bad ?
RFC standard: This is a RFC 25 BioBrick, thus ATGGCCGGC and ACCGGT were added to the 5' and 3' ends.
The BioBrick-AutoAnnotator was created by TU-Munich 2013 iGEM team. For information please read the description.