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AutoAnnotator by Team TU-Munich 2013

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Parameters for BioBrick BBa_K801090 automatically created by the BioBrick-AutoAnnotator version 1.0
Nucleotide sequence in RFC 25, so ATGGCCGGC and ACCGGT were added (in italics) to the 5' and 3' ends: (underlined part encodes the protein)
 ATGGCCGGCTACACAATG ... ATGCTCGCTACCGGT
 ORF from -8 to 2160 (excluding stop-codon)
Amino acid sequence:
  1 MAGYTMAPSLDSISHSFANGVASAKQAVNGASTNLAVAGSHLPTTQVTQVDIVEKMLAAPTDSTLELDGYSLNLGDVVSAARKGRPVRVKDSDEIRSKID
101 KSVEFLRSQLSMSVYGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPSSFDSFRLGRGLENSLPLEVVRGAMTIRVNSLTRGHSAVRLVVLEALTNFL
201 NHGITPIVPLRGTISASGDLSPLSYIAAAISGHPDSKVHVVHEGKEKILYAREAMALFNLEPVVLGPKEGLGLVNGTAVSASMATLALHDAHMLSLLSQS
301 LTAMTVEAMVGHAGSFHPFLHDVTRPHPTQIEVAGNIRKLLEGSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTT
401 DNPLIDVENKTSHHGGNFQAAAVANTMEKTRLGLAQIGKLNFTQLTEMLNAGMNRGLPSCLAAEDPSLSYHCKGLDIAAAAYTSELGHLANPVTTHVQPA
501 EMANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFKKQFGPAIVSLIDQHFGSAMTGSNLRDELVEKVNKTLAKRLEQTNSYDLVP
601 RWHDAFSFAAGTVVEVLSSTSLSLAAVNAWKVAAAESAISLTRQVRETFWSAASTSSPALSYLSPRTQILYAFVREELGVKARRGDVFLGKQEVTIGSNV
701 SKIYEAIKSGRINNVLLKMLATG*
Amino acid composition:
A (Ala)80 (11.1%)
R (Arg)35 (4.8%)
N (Asn)29 (4.0%)
D (Asp)30 (4.1%)
C (Cys)4 (0.6%)
Q (Gln)23 (3.2%)
E (Glu)41 (5.7%)
G (Gly)50 (6.9%)
H (His)26 (3.6%)
I (Ile)31 (4.3%)
L (Leu)87 (12.0%)
K (Lys)29 (4.0%)
M (Met)16 (2.2%)
F (Phe)21 (2.9%)
P (Pro)27 (3.7%)
S (Ser)69 (9.5%)
T (Thr)48 (6.6%)
W (Trp)4 (0.6%)
Y (Tyr)13 (1.8%)
V (Val)60 (8.3%)
Amino acid counting:  
Total number:723
Positively charged (Arg+Lys):64 (8.9%)
Negatively charged (Asp+Glu):71 (9.8%)
Biochemical parameters:
Molecular mass [Da]:77561.4
Theoretical pI:6.44
Extinction coefficient at 280 nm [M-1 cm-1]:41370 / 41620 (all Cys red/ox)
Organism specific parameters
Organism
E. coli
B. subtilis
S. cervisiae
A. thaliana
Mammals
Estimated half-life [h]
>10
>20
30
Codon usage (CAI)
good (0.63)
B. subtilis
acceptable (0.46)
A. thaliana
good (0.69)
Organism specific parameters
Organism:E. coliB. subtilisS. cervisiaeA. thalianaMammals
Estimated half-life [h]>10>2030
Codon usage (CAI)good (0.63)B. subtilisacceptable (0.46)A. thalianagood (0.69)
Sequence features:
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