Team:UTK-Knoxville/primers
From 2013.igem.org
Gibson Primers
Name | Sequence | Melting Temperature | Function / Comment |
Transmembrane Construct | |||
EnvZ_F | gtaagtcacgacttgcgcacgccgctgac | 70 | Amplifies EnvZ does not include any overlap of the sensor part. |
Envz_R | ggcggccgctctattagtgatggtggtgatgatgttacccttcttttgtcgtgc | 75 | Amplifies EnvZ (20 bp) and includes overlap (34 bp) of the free space between it and the terminator. |
OmpR_F | agaaataattttgtttaactataagaaggagatatacatatgcaagagaactacaagatt | 64 | Amplifies OmpR and overlaps with the RBS and T7 promoter. Note the backbone needs to have the T7 promoter and RBS already. |
OmpR_R | tcatgctttagagccgtccggtacaaagac | 65 | Amplifies OmpR and does not include the second RBS to avoid homology. |
Aer | |||
Aer_f | tctttgtaccggacggctctaaagcatgaaaggagatataatgtcttctcatccgtatgt | 71 | Includes overlap with OmpR (29 bp), the RBS (11 bp) and overlap with Aer (20 bp) |
Aer_R | TACGCgtcagcggcgtgcgcaagtcgtgacttacatttctgacactggacacctg | 77 | Include overlap with EnvZ (34 bp) and Aer (21 bp). The temperature differance is quite extereme. |
NarX | |||
NarX_F | tctttgtaccggacggctctaaagcatgaAAGGAGATATAatgcttaaacgttgtctctc | 71 | Includes overlap with OmpR (29 bp), the RBS (11 bp) and overlap with NarX (20 bp) |
NarX_R | tacgcgtcagcggcgtgcgcaagtcgtgacttacatttttatgctccagcccggc | 79 | Include overlap with EnvZ (34 bp) and NarX (21 bp). The temperature differance is quite extereme. |
Cytoplasmic Construct | |||
NtrC_F | TAGAAATAATTTTGTTTAACTataagaaggagatatacatatgcaacgagggatagtctg | 65 | Amplifies NtrC and overlaps with the RBS and T7 promoter. Note the backbone needs to have the T7 promoter and RBS already. |
NtrC_R | gagctggggatggagtgaTTTTAACTTACGC | 64 | Amplifies NtrC and does not include the second RBS to avoid homology. |
NtrB_F | ccgatggataaccagcgccgcTTAAGTCAGG | 69 | Amplifies NtrB does not include any overlap of the sensor part. |
NtrB_R | GGCGGCCGCTCTATTAGTGATGGTGGTGATGATGttatttcctgataggcaggt | 74 | Amplifies NtrB (20 bp) and includes overlap (34 bp) of the free space between it and the terminator. |
HemAT | |||
HemAT_F | gtaagttaaaatcactccatccccagctcAAGGAGATATAttgttatttaaaaaagacag | 67 | Includes overlap with NtrC (29 bp), the RBS (11 bp) and overlap with HemAT (20 bp) |
HemAT_R | CTGTTCCTGACTTAAGCggcgctggttatccatcggctggttgtactcgctttgaaac | 75 | Include overlap with NtrB (34 bp) and HemAT (21 bp). The temperature differance is quite extereme. |
RcoM | |||
RcoM_F | gtaagttaaaatcactccatccccagctcAAGGAGATATAatgtttaaatattttgcaatt | 67 | Includes overlap with NtrC (29 bp), the RBS (11 bp) and overlap with RcoM (20 bp) |
RcoM_R | gttcctgacttaagcggcgctggttatccatcggcttatggacggttacactacc | 75 | Include overlap with NtrB (34 bp) and RcoM (21 bp). The temperature differance is quite extereme. |
TodS | |||
TodS_F | gtaagttaaaatcactccatccccagctcAAGGAGATATAatgagctccttggatagaaa | 70 | Includes overlap with NtrC (29 bp), the RBS (11 bp) and overlap with TodS (20 bp) |
TodS_R | GTTCCTGACTTAAgcggcgctggttatccatcggatcggtaatattgcgcccttc | 75 | Include overlap with NtrB (34 bp) and TodS (21 bp) |
LasR | |||
LasR_F | |||
LasR_R | |||
Note: APE and IDT primer Tm differ |
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