Team:BYU Provo/Notebook/Phage Purification/Fallexp/Period1/Exp/9.76CsClGradient

From 2013.igem.org

(Difference between revisions)
 
(One intermediate revision not shown)
Line 4: Line 4:
{| width="100%"
{| width="100%"
-
| colspan="3" | <font color="#333399" size="5" font face="Calibri"> '''Phage Purification September - August Notebook: Experiments'''</font>
+
| colspan="3" | <font color="#333399" size="5" font face="Calibri">  
 +
 
 +
: '''Phage Purification September - October Notebook: Experiments'''</font>
<br>
<br>
<br>
<br>
-
 
|- valign="top"
|- valign="top"
-
| style="width: 18%; background-color: transparent;"|
+
| style="width: 20%; background-color: transparent;"|
<font color="#333399" size="3" font face="Calibri">
<font color="#333399" size="3" font face="Calibri">
-
: [[Team:BYU_Provo/Phage_Purification|Overview]]
+
<font size = "4">
 +
 
 +
: <u> '''Phage Purification''' </u> </font>
: [[Team:BYU Provo/Notebook/Phage_Purification/Winterexp|March-April]]
: [[Team:BYU Provo/Notebook/Phage_Purification/Winterexp|March-April]]
Line 26: Line 29:
</font>
</font>
-
| style="width: 82%; background-color: transparent;"|
+
| style="width: 80%; background-color: transparent;"|
-
 
+
<font face="Calibri" size="3">
<font face="Calibri" size="3">

Latest revision as of 00:38, 28 September 2013


Phage Purification September - October Notebook: Experiments



Phage Purification
March-April
May-June
July-August
September-October

9.7 CsCl Gradient


I) Purpose

Try to figure out which density the WT T7 phage bands with our new CsCl stock.

II) Expected Outcome

We should see a band of WT T7 phage around the 1.2 - 1.5 density.

III) Reagants Used

T7 mutant phage
CsCl
phage suspension buffer


IV) Actual Procedure

Create 2 tubes of different concentrations of CsCl solutions to create a gradient.
For the first tube
Add 0.4225 g of CsCl to 3 mL of phage suspension buffer to create a 1.1 g/ml density gradient.
Add 0.8245 g of CsCl to 3 mL of phage suspension buffer to create a 1.2 g/ml density gradient.
Add 1.2293 g of CsCl to 3 mL of phage suspension buffer to create a 1.3 g/ml density gradient.
Add 1.6371 g of CsCl to 3 mL of phage suspension buffer to create a 1.4 g/ml density gradient.
Add 2.0477 g of CsCl to 3 mL of phage suspension buffer to create a 1.5 g/ml density gradient.
Add 2.4611 g of CsCl to 3 mL of phage suspension buffer to create a 1.6 g/ml density gradient.
Add 2.8774 g of CsCl to 3 mL of phage suspension buffer to create a 1.7 g/ml density gradient.
Add 3.2966 g of CsCl to 3 mL of phage suspension buffer to create a 1.8 g/ml density gradient.
For the second tube
Add 0.5497 g of CsCl to 2 mL of phage suspension buffer to create a 1.2 g/ml density gradient.
Add 0.6844 g of CsCl to 2 mL of phage suspension buffer to create a 1.25 g/ml density gradient.
Add 1.2293 g of CsCl to 3 mL of phage suspension buffer to create a 1.3 g/ml density gradient.
Add 1.4328 g of CsCl to 3 mL of phage suspension buffer to create a 1.35 g/ml density gradient.
Add 1.0914 g of CsCl to 2 mL of phage suspension buffer to create a 1.4 g/ml density gradient.
Add 1.8420 g of CsCl to 3 mL of phage suspension buffer to create a 1.45 g/ml density gradient.
Add 2.0477 g of CsCl to 3 mL of phage suspension buffer to create a 1.5 g/ml density gradient.
Add 1.6407 g of CsCl to 2 mL of phage suspension buffer to create a 1.6 g/ml density gradient.
Add 1.9183 g of CsCl to 2 mL of phage suspension buffer to create a 1.7 g/ml density gradient.
Add 2.1977 g of CsCl to 2 mL of phage suspension buffer to create a 1.8 g/ml density gradient.
Layer the two gradients into two separate centrifuge tubes.
Add 4 mL of mutant phage to the top of the gradient in both tubes
Fill the remaining space in the tube with phage suspension buffer to the top.
Centrifuge at 26500 rpms (100,000 g) for 2.5 hours.

V) Results

We didn't observe any banding in either of the centrifuge tubes. We are still trying to figure out why it refuses to band now, but has in past experiments.
A
T7 in 1st gradient
A
T7 in 2nd gradient