Team:BYU Provo/Notebook/Phage Purification/Winterexp/Period1/Exp/8.26 CsCl Gradient

From 2013.igem.org

Revision as of 01:25, 28 September 2013 by Amberb6 (Talk | contribs)


Phage Purification September - October Notebook: Experiments



Phage Purification
March-April
May-June
July-August
September-October

8.26 T7 CsCl Gradient


I) Purpose

Try to figure out which density the WT T7 phage bands with our new CsCl stock.

II) Expected Outcome

We should see a band of WT T7 phage around the 1.2 - 1.5 density.

III) Reagants Used

T7 mutant phage
CsCl
phage suspension buffer


IV) Actual Procedure

Create 2 tubes of different concentrations of CsCl solutions to create a gradient.
For the first tube
Add 0.4225 g of CsCl to 3 mL of phage suspension buffer to create a 1.1 g/ml density gradient.
Add 0.8245 g of CsCl to 3 mL of phage suspension buffer to create a 1.2 g/ml density gradient.
Add 1.2293 g of CsCl to 3 mL of phage suspension buffer to create a 1.3 g/ml density gradient.
Add 1.6371 g of CsCl to 3 mL of phage suspension buffer to create a 1.4 g/ml density gradient.
Add 2.0477 g of CsCl to 3 mL of phage suspension buffer to create a 1.5 g/ml density gradient.
Add 2.4611 g of CsCl to 3 mL of phage suspension buffer to create a 1.6 g/ml density gradient.
Add 2.8774 g of CsCl to 3 mL of phage suspension buffer to create a 1.7 g/ml density gradient.
Add 3.2966 g of CsCl to 3 mL of phage suspension buffer to create a 1.8 g/ml density gradient.
For the second tube
Add 0.5497 g of CsCl to 2 mL of phage suspension buffer to create a 1.2 g/ml density gradient.
Add 0.6844 g of CsCl to 2 mL of phage suspension buffer to create a 1.25 g/ml density gradient.
Add 1.2293 g of CsCl to 3 mL of phage suspension buffer to create a 1.3 g/ml density gradient.
Add 1.4328 g of CsCl to 3 mL of phage suspension buffer to create a 1.35 g/ml density gradient.
Add 1.0914 g of CsCl to 2 mL of phage suspension buffer to create a 1.4 g/ml density gradient.
Add 1.8420 g of CsCl to 3 mL of phage suspension buffer to create a 1.45 g/ml density gradient.
Add 2.0477 g of CsCl to 3 mL of phage suspension buffer to create a 1.5 g/ml density gradient.
Add 1.6407 g of CsCl to 2 mL of phage suspension buffer to create a 1.6 g/ml density gradient.
Add 1.9183 g of CsCl to 2 mL of phage suspension buffer to create a 1.7 g/ml density gradient.
Add 2.1977 g of CsCl to 2 mL of phage suspension buffer to create a 1.8 g/ml density gradient.
Layer the two gradients into two separate centrifuge tubes.
Add 4 mL of mutant phage to the top of the gradient in both tubes
Fill the remaining space in the tube with phage suspension buffer to the top.
Centrifuge at 26500 rpms (100,000 g) for 2.5 hours.

V) Results

We didn't observe any banding in either of the centrifuge tubes.
A
T7 in 1st gradient
A
T7 in 2nd gradient
A
T7 in 2nd gradient