Team:UC-Santa Cruz/Project/Biofilm

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Revision as of 01:49, 28 September 2013

Biofilm Membrane

Formation of a continuous dense monolayer biofilm is at the heart of our biological desalination system. The biofilm separates two chambers, and mediates the unidirectional transport of ions from one chamber to the other by means of the recombinant pumps and channels engineered to localize to the two sides of the biofilm. In principle, a biofilm can selectively transport any molecule for which a set of inward and outward active transporters are available.

The goal of the biofilm team was to grow high-density monolayer biofilms of Caulobacter crescentus. This module would then be combined with the pump/polarization modules to produce a “bio-active biofilm” that can be tested for efficient ion transport by appropriate assays.

Caulobacter crescentus is a gram negative aquatic bacterium whose unusual life cycle has been extensively studied. It divides asymmetrically to produce a replicating ‘stalked’ cell that is normally attached to a substratum and an immature ‘swarmer’ cell that is motile. As the stalked cell prepares for cell division, it becomes polarized and expresses different sets of proteins at the two opposite poles of the cell; this ensures that the flagellum, for instance, is only formed at the distal pole of the cell that will give rise to the swarmer cell, and not at the proximal pole where the stalk is located.

Caulobacter crescentus, naturally growing in ponds and streams, can be grown in complex media such as PYE, or in defined media such as M2. It is commonly grown at 33 degrees Celsius with sufficient aeration. The wild-type strain CB15 is resistant to the antibiotic ampicillin, which can be added to the media to help prevent contamination.

We started with the simple task of growing the wild-type Caulobacter strain CB15 in complex media and characterizing its general growth features. At 33 degrees Celsius and with vigorous shaking, the optical density of the culture at 550 nm peaks at ~ 1.8 units by ~48 h, after which it decreases probably due to cell death.

We then grew Caulobacter biofilms. We cultured the cells on different surfaces (glass or plastic coverslips, or filter paper) under a number of conditions used previously to obtain monolayer biofilms, in order to find the conditions that result in the best biofilm morphology in our hands. We examined the surfaces at different time points by microscopy. We finally used confocal microscopy to observe DAPI-stained biofilms at high resolution.

Our results showed that biofilms grow to maximal confluency on plastic plates after 2 – 3 days of growth with daily exchange of the media, and patches of monolayer biofilms are clearly visible as early as 24 h.

We were therefore able to reproduce the published results of Caulobacter biofilm growth, and found an optimal set of growth conditions, times, and substratum surface for desirable biofilm formation.

What’s next? There are many aspects of the biofilm growth that need further improvement. First, in the final biological desalinator system, the biofilm grows on a membrane substratum that is permeable to ions and water. Guided by our preliminary results, we will seek the optimal membrane material for best biofilm growth.

Additionally, the desalinator biofilm should stay viable AND polarized for a long time in order to achieve maximal performance. This will be addressed by arresting the cell cycle using available simple techniques, such that the cells remain in the polarized state for an extended period of time. Finally, the biofilm should be sealed to prevent gradient-driven back-transport of the ions. This can be achieved automatically by the formation of tightly-packed monolayer biofilms, or by production of ‘sealing components’ at the lateral side of the cells to glue them together.

We also transformed the Caulobacter cells with integrating plasmids encoding inducible fluorescent proteins, as a practice for out later task of combining the pump/polarization modules with the biofilm module. The plasmids pXYFPC-2 and pVCFPC-4 were kindly provided by the Shapiro Lab at Stanford University. They encode YFP under a xylose-inducible promoter, and CFP under a vanillate-inducible promoter respectively.

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 == Biofilm Membrane ==
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 '''Formation of a continuous dense monolayer biofilm is at the heart of our biological desalination system'''.  The biofilm separates two chambers, and mediates the unidirectional transport of ions from one chamber to the other by means of the recombinant pumps and channels engineered to localize to the two sides of the biofilm.  In principle, a biofilm can selectively transport any molecule for which a set of inward and outward active transporters are available.
-'''The goal of the biofilm team was to grow high-density monolayer biofilms of Caulobacter crescentus'''.  This module would then be combined with the pump/polarization modules to produce a “bio-active biofilm” that can be tested for efficient ion transport by appropriate assays.
+'''The goal of the biofilm team was to grow high-density monolayer biofilms of ''Caulobacter crescentus'''''.  This module would then be combined with the pump/polarization modules to produce a “bio-active biofilm” that can be tested for efficient ion transport by appropriate assays.
-'''Caulobacter crescentus is a gram negative aquatic bacterium whose unusual life cycle has been extensively studied'''.  It divides asymmetrically to produce a replicating ‘stalked’ cell that is normally attached to a substratum and an immature ‘swarmer’ cell that is motile.  As the stalked cell prepares for cell division, it becomes polarized and expresses different sets of proteins at the two opposite poles of the cell; this ensures that the flagellum, for instance, is only formed at the distal pole of the cell that will give rise to the swarmer cell, and not at the proximal pole where the stalk is located.
+'''''Caulobacter crescentus'' is a gram negative aquatic bacterium whose unusual life cycle has been extensively studied'''.  It divides asymmetrically to produce a replicating ‘stalked’ cell that is normally attached to a substratum and an immature ‘swarmer’ cell that is motile.  As the stalked cell prepares for cell division, it becomes polarized and expresses different sets of proteins at the two opposite poles of the cell; this ensures that the flagellum, for instance, is only formed at the distal pole of the cell that will give rise to the swarmer cell, and not at the proximal pole where the stalk is located.
-Caulobacter crescentus, naturally growing in ponds and streams, can be grown in complex media such as PYE, or in defined media such as M2.  It is commonly grown at 33 degrees Celsius with sufficient aeration.  The wild-type strain CB15 is resistant to the antibiotic ampicillin, which can be added to the media to help prevent contamination.
+''Caulobacter crescentus'', naturally growing in ponds and streams, can be grown in complex media such as PYE, or in defined media such as M2.  It is commonly grown at 33 degrees Celsius with sufficient aeration.  The wild-type strain CB15 is resistant to the antibiotic ampicillin, which can be added to the media to help prevent contamination.
 '''We started with the simple task of growing the wild-type Caulobacter strain CB15 in complex media and characterizing its general growth features'''. At 33 degrees Celsius and with vigorous shaking, the optical density of the culture at 550 nm peaks at ~ 1.8 units by ~48 h, after which it decreases probably due to cell death.