Team:UCL/Labbook/Week9

From 2013.igem.org

(Difference between revisions)
 
(5 intermediate revisions not shown)
Line 52: Line 52:
<div class="full_page">
<div class="full_page">
-
<p class="body_text"> <a href="https://2013.igem.org/Team:UCL/LabBook/Week1">Week 1</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week2"> Week 2</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week3"> Week 3</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week4"> Week 4</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week5"> Week 5</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week6"> Week 6</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week7"> Week 7</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week8"> Week 8</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week9"> Week 9</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week10"> Week 10</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week11"> Week 11</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week12"> Week 12</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week13"> Week 13</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week14"> Week 14</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week15"> Week 15</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week16"> Week 16</a>
+
<p class="body_text"> <a href="https://2013.igem.org/Team:UCL/LabBook/Week1">Week 1</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week2"> Week 2</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week3"> Week 3</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week4"> Week 4</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week5"> Week 5</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week6"> Week 6</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week7"> Week 7</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week8"> Week 8</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week9"> Week 9</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week10"> Week 10</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week11"> Week 11</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week12"> Week 12</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week13"> Week 13</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week14"> Week 14</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week15"> Week 15</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week16"> Week 16</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week17"> Week 17</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week18"> Week 18</a>  
</p>  
</p>  
</div>
</div>
Line 64: Line 64:
</p>
</p>
<p class="body_text">
<p class="body_text">
-
<b>Monday 29th July</b> - A glycerol stock of pSecTag2A from 2009 was restored. This was <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> streaked</a> onto 3 plates (2x LB Amp and 1x No drug), additionally four Falcons with 2ul LB were inoculated with the glycerol stock (2x LB No drug, 2X LB Amp). These were left to incubate overnight.  
+
<b>Monday 29th July</b> - A glycerol stock of pSecTag2A from 2009 was restored. This was <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> streaked</a> onto 3 plates (2x LB Amp and 1x No drug). Four Falcons with 2ul LB were inoculated overnight at 37°C with the glycerol stock (2x LB No drug, 2X LB Amp).  
</p>
</p>
<p class="body_text">
<p class="body_text">
-
<b>Tuesday 30th July</b> - pSecTag2A Amp and No drug cultures were centrifuged (5 minutes at 4000rpm) and the pellet frozen to be used later in a <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> miniprep</a>. pSecTag2A plates displayed good colony growth. Colonies were picked from non-competent W3110 streaked plates and inoculated in LB ->incu-shake 37C o/n.  
+
<b>Tuesday 30th July</b>
 +
</p>
 +
<p class="body_text">
 +
pSecTag2A Ampcillin and No drug cultures were centrifuged (5 minutes at 4000rpm) and the pellet frozen to be used later in a <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> miniprep</a>. pSecTag2A plates displayed colony growth. Colonies were picked from non-competent W3110 streaked plates and inoculated in LB.
</p>
</p>
<p class="body_text">
<p class="body_text">
Line 100: Line 103:
</p>
</p>
<p class="body_text">
<p class="body_text">
-
<b>Wednesday 31st July</b> - A new stock of <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> competent cells</a> were generated and stored, these were tested for competence via <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> transformation</a> using pSecTag2A and <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> streaking</a> onto <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> amp plates</a> -> incubate 37C o/n.
+
<b>Wednesday 31st July</b>
</p>
</p>
<p class="body_text">
<p class="body_text">
-
<a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> Ampicillin</a> was produced and stored. Following  <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> miniprep</a> of pSecTag2A a <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> gel</a> was prepared for analytical digest with HindIII [link to HindIII conditions] [insert gel image HindIII analytical digest of pSecTag2A].  <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> 50X TAE diluted to 1X</a>.  
+
A new stock of <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> competent cells</a> were generated and stored, these were tested for competence via <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> transformation</a> using pSecTag2A and <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> streaking</a> onto <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> ampicillin plates</a>. Incubate at 37°C overnight.
 +
</p>
 +
<p class="body_text">
 +
<a href="https://2013.igem.org/Team:UCL/Project/Protocols"> Ampicillin</a> was produced and stored. Following <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> miniprep</a> of pSecTag2A a <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> gel</a> was prepared analytical digest with <a href="https://www.neb.com/products/r0104-hindiii" target="_blank"> HindIII</a>.  
</p>
</p>
<p class="body_text">
<p class="body_text">
Line 153: Line 159:
</p>
</p>
<p class="body_text">
<p class="body_text">
-
<b>Monday 29th July</b> - Thawed and revived HeLa cells, grown in two T25 flasks in DMEM + 10% FBS + 2 mM L-Glu
+
<b>Monday 29th July</b>
</p>
</p>
<p class="body_text">
<p class="body_text">
-
<b>Tuesday 30th July</b> - HeLa cells are not looking very happy, with many floating cells. Cells are left to grow over the weekend
+
Thawed and revived HeLa cells, grown in two T25 flasks in DMEM + 10% FBS + 2 mM L-Glu
 +
</p>
 +
<p class="body_text">
 +
<b>Tuesday 30th July</b>
 +
</p>
 +
<p class="body_text">
 +
HeLa cells are not looking very happy, with many floating cells. Cells are left to grow over the weekend
</p>
</p>
</div>
</div>
Line 171: Line 183:
</p>
</p>
<p class="body_text">
<p class="body_text">
-
<b>Thursday 1st August</b> - Results from newly generated <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> competent cells transformed</a> with pSecTag2A:
+
<b>Thursday 1st August</b>
 +
</p>
 +
<p class="body_text">
 +
Results from newly generated competent cells transformed with pSecTag2A:
</p>
</p>
<p class="body_text">
<p class="body_text">
Line 205: Line 220:
</p>
</p>
<p class="body_text">
<p class="body_text">
-
This indicated that the cells are more competent than the last batch, although growth on the negative control was a cause for concern. Therefore the <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> transformation protocol</a> from yesterday was repeated to see whether the <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> ampicilin</a> was working -> plates left for incubation 37C o/n.
+
This indicated that the cells are more competent than the last batch, although growth on the negative control was a cause for concern. Therefore the <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> transformation protocol</a> from yesterday was repeated to see whether the <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> ampicilin</a> was working. Plates were left for incubation at 37°C overnight.
 +
</p>
 +
<p class="body_text">
 +
<a href="https://2013.igem.org/Team:UCL/Project/Protocols"> Transformation</a> of <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> competent cells</a> with pSecTag2A. 100µl was then spread onto 6 plates (4x Amp, 2x No drug). Left to incubate overnight at 37°C.  
</p>
</p>
<p class="body_text">
<p class="body_text">
-
<a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> Transformation</a> of <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> competent cells</a> with pSecTag2A. 100µl was then spread onto 6 plates (4x Amp, 2x No drug). Left to incubate o/n 37C.
+
<b>Friday 2nd August</b>
</p>
</p>
<p class="body_text">
<p class="body_text">
-
Friday 2nd August - Plates displayed significant colony growth on <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> amp plates</a> indicating successful <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> transformation</a>. Negative control however displayed slight colony growth - ampicillin not working effectively, new <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> ampicillin</a> was therefore prepared. End of week inventory was recorded and stocks were topped up.  
+
Plates displayed significant colony growth on ampicillin plates indicating successful <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> transformation</a>. Negative control however displayed slight colony growth, indicating that the ampicillin was not working effectively. New <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> ampicillin</a> was therefore prepared.
</p>
</p>

Latest revision as of 23:46, 4 October 2013

Lab Weeks

Week 9

Bacterial Lab

Monday 29th July - A glycerol stock of pSecTag2A from 2009 was restored. This was streaked onto 3 plates (2x LB Amp and 1x No drug). Four Falcons with 2ul LB were inoculated overnight at 37°C with the glycerol stock (2x LB No drug, 2X LB Amp).

Tuesday 30th July

pSecTag2A Ampcillin and No drug cultures were centrifuged (5 minutes at 4000rpm) and the pellet frozen to be used later in a miniprep. pSecTag2A plates displayed colony growth. Colonies were picked from non-competent W3110 streaked plates and inoculated in LB.

Vial Ampicillin Plate Plasmid Insertion Colony Count
1 (Main) Yes Yes 100+
2 (Positive Control) No Yes 100+
3 (Negative Control) Yes No 0

Wednesday 31st July

A new stock of competent cells were generated and stored, these were tested for competence via transformation using pSecTag2A and streaking onto ampicillin plates. Incubate at 37°C overnight.

Ampicillin was produced and stored. Following miniprep of pSecTag2A a gel was prepared analytical digest with HindIII.

Item Volume (ul)
DNA pSecTag2A 5
HindIII 1
Buffer 1
BSA 0.5
dH20 2.5
Total 10

Results displayed uncut bands at expected lengths. However HindIII cut pSecTag2A wells displayed too many bands, indicating possible contamination or uncut DNA.

Mammalian Lab

Monday 29th July

Thawed and revived HeLa cells, grown in two T25 flasks in DMEM + 10% FBS + 2 mM L-Glu

Tuesday 30th July

HeLa cells are not looking very happy, with many floating cells. Cells are left to grow over the weekend

August

Bacterial Lab

Thursday 1st August

Results from newly generated competent cells transformed with pSecTag2A:

Vial Ampicillin Plate Plasmid Insertion Colony Count
1 (Main) Yes Yes 100+
2 (Positive Control) No Yes 100+
3 (Negative Control) Yes No 10

This indicated that the cells are more competent than the last batch, although growth on the negative control was a cause for concern. Therefore the transformation protocol from yesterday was repeated to see whether the ampicilin was working. Plates were left for incubation at 37°C overnight.

Transformation of competent cells with pSecTag2A. 100µl was then spread onto 6 plates (4x Amp, 2x No drug). Left to incubate overnight at 37°C.

Friday 2nd August

Plates displayed significant colony growth on ampicillin plates indicating successful transformation. Negative control however displayed slight colony growth, indicating that the ampicillin was not working effectively. New ampicillin was therefore prepared.

Vial Ampicillin Plate Plasmid Insertion Colony Count
1 (Main) Yes Yes 100+
2 (Positive Control) No Yes 100+
3 (Negative Control) Yes No 15