"
Team:UCL/Labbook/Week9
From 2013.igem.org
(Difference between revisions)
| (8 intermediate revisions not shown) | |||
| Line 52: | Line 52: | ||
<div class="full_page"> | <div class="full_page"> | ||
| - | <p class="body_text"> <a href="https://2013.igem.org/Team:UCL/LabBook/Week1">Week 1</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week2"> Week 2</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week3"> Week 3</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week4"> Week 4</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week5"> Week 5</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week6"> Week 6</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week7"> Week 7</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week8"> Week 8</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week9"> Week 9</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week10"> Week 10</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week11"> Week 11</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week12"> Week 12</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week13"> Week 13</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week14"> Week 14</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week15"> Week 15</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week16"> Week 16</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week17"> Week 17</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week18"> Week 18 | + | <p class="body_text"> <a href="https://2013.igem.org/Team:UCL/LabBook/Week1">Week 1</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week2"> Week 2</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week3"> Week 3</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week4"> Week 4</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week5"> Week 5</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week6"> Week 6</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week7"> Week 7</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week8"> Week 8</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week9"> Week 9</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week10"> Week 10</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week11"> Week 11</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week12"> Week 12</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week13"> Week 13</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week14"> Week 14</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week15"> Week 15</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week16"> Week 16</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week17"> Week 17</a> | <a href="https://2013.igem.org/Team:UCL/Labbook/Week18"> Week 18</a> |
</p> | </p> | ||
</div> | </div> | ||
| Line 64: | Line 64: | ||
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| - | 29th July - A glycerol stock of pSecTag2A from 2009 was restored. This was <a href="https://2013.igem.org/Team:UCL/Project/Protocols | + | <b>Monday 29th July</b> - A glycerol stock of pSecTag2A from 2009 was restored. This was <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> streaked</a> onto 3 plates (2x LB Amp and 1x No drug). Four Falcons with 2ul LB were inoculated overnight at 37°C with the glycerol stock (2x LB No drug, 2X LB Amp). |
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| - | 30th July | + | <b>Tuesday 30th July</b> |
| + | </p> | ||
| + | <p class="body_text"> | ||
| + | pSecTag2A Ampcillin and No drug cultures were centrifuged (5 minutes at 4000rpm) and the pellet frozen to be used later in a <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> miniprep</a>. pSecTag2A plates displayed colony growth. Colonies were picked from non-competent W3110 streaked plates and inoculated in LB. | ||
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| Line 100: | Line 103: | ||
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| - | 31st July | + | <b>Wednesday 31st July</b> |
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| - | + | A new stock of <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> competent cells</a> were generated and stored, these were tested for competence via <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> transformation</a> using pSecTag2A and <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> streaking</a> onto <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> ampicillin plates</a>. Incubate at 37°C overnight. | |
| + | </p> | ||
| + | <p class="body_text"> | ||
| + | <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> Ampicillin</a> was produced and stored. Following <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> miniprep</a> of pSecTag2A a <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> gel</a> was prepared analytical digest with <a href="https://www.neb.com/products/r0104-hindiii" target="_blank"> HindIII</a>. | ||
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| Line 153: | Line 159: | ||
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| - | 29th July | + | <b>Monday 29th July</b> |
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| - | 30th July | + | Thawed and revived HeLa cells, grown in two T25 flasks in DMEM + 10% FBS + 2 mM L-Glu |
| + | </p> | ||
| + | <p class="body_text"> | ||
| + | <b>Tuesday 30th July</b> | ||
| + | </p> | ||
| + | <p class="body_text"> | ||
| + | HeLa cells are not looking very happy, with many floating cells. Cells are left to grow over the weekend | ||
</p> | </p> | ||
</div> | </div> | ||
| Line 171: | Line 183: | ||
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| - | 1st August | + | <b>Thursday 1st August</b> |
| + | </p> | ||
| + | <p class="body_text"> | ||
| + | Results from newly generated competent cells transformed with pSecTag2A: | ||
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| Line 205: | Line 220: | ||
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| - | This indicated that the cells are more competent than the last batch, although growth on the negative control was a cause for concern. Therefore the <a href="https://2013.igem.org/Team:UCL/Project/Protocols | + | This indicated that the cells are more competent than the last batch, although growth on the negative control was a cause for concern. Therefore the <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> transformation protocol</a> from yesterday was repeated to see whether the <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> ampicilin</a> was working. Plates were left for incubation at 37°C overnight. |
| + | </p> | ||
| + | <p class="body_text"> | ||
| + | <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> Transformation</a> of <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> competent cells</a> with pSecTag2A. 100µl was then spread onto 6 plates (4x Amp, 2x No drug). Left to incubate overnight at 37°C. | ||
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| - | < | + | <b>Friday 2nd August</b> |
</p> | </p> | ||
<p class="body_text"> | <p class="body_text"> | ||
| - | + | Plates displayed significant colony growth on ampicillin plates indicating successful <a href="https://2013.igem.org/Team:UCL/Project/Protocols"> transformation</a>. Negative control however displayed slight colony growth, indicating that the ampicillin was not working effectively. New <a href="https://2013.igem.org/Team:UCL/Project/Protocols" target="_blank"> ampicillin</a> was therefore prepared. | |
</p> | </p> | ||
Latest revision as of 23:46, 4 October 2013
Lab Weeks
Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 | Week 12 | Week 13 | Week 14 | Week 15 | Week 16 | Week 17 | Week 18
Week 9
Bacterial Lab
Monday 29th July - A glycerol stock of pSecTag2A from 2009 was restored. This was streaked onto 3 plates (2x LB Amp and 1x No drug). Four Falcons with 2ul LB were inoculated overnight at 37°C with the glycerol stock (2x LB No drug, 2X LB Amp).
Tuesday 30th July
pSecTag2A Ampcillin and No drug cultures were centrifuged (5 minutes at 4000rpm) and the pellet frozen to be used later in a miniprep. pSecTag2A plates displayed colony growth. Colonies were picked from non-competent W3110 streaked plates and inoculated in LB.
| Vial | Ampicillin Plate | Plasmid Insertion | Colony Count |
|---|---|---|---|
| 1 (Main) | Yes | Yes | 100+ |
| 2 (Positive Control) | No | Yes | 100+ |
| 3 (Negative Control) | Yes | No | 0 |
Wednesday 31st July
A new stock of competent cells were generated and stored, these were tested for competence via transformation using pSecTag2A and streaking onto ampicillin plates. Incubate at 37°C overnight.
Ampicillin was produced and stored. Following miniprep of pSecTag2A a gel was prepared analytical digest with HindIII.
| Item | Volume (ul) |
|---|---|
| DNA pSecTag2A | 5 |
| HindIII | 1 |
| Buffer | 1 |
| BSA | 0.5 |
| dH20 | 2.5 |
| Total | 10 |
Results displayed uncut bands at expected lengths. However HindIII cut pSecTag2A wells displayed too many bands, indicating possible contamination or uncut DNA.
Mammalian Lab
Monday 29th July
Thawed and revived HeLa cells, grown in two T25 flasks in DMEM + 10% FBS + 2 mM L-Glu
Tuesday 30th July
HeLa cells are not looking very happy, with many floating cells. Cells are left to grow over the weekend
August
Bacterial Lab
Thursday 1st August
Results from newly generated competent cells transformed with pSecTag2A:
| Vial | Ampicillin Plate | Plasmid Insertion | Colony Count |
|---|---|---|---|
| 1 (Main) | Yes | Yes | 100+ |
| 2 (Positive Control) | No | Yes | 100+ |
| 3 (Negative Control) | Yes | No | 10 |
This indicated that the cells are more competent than the last batch, although growth on the negative control was a cause for concern. Therefore the transformation protocol from yesterday was repeated to see whether the ampicilin was working. Plates were left for incubation at 37°C overnight.
Transformation of competent cells with pSecTag2A. 100µl was then spread onto 6 plates (4x Amp, 2x No drug). Left to incubate overnight at 37°C.
Friday 2nd August
Plates displayed significant colony growth on ampicillin plates indicating successful transformation. Negative control however displayed slight colony growth, indicating that the ampicillin was not working effectively. New ampicillin was therefore prepared.
| Vial | Ampicillin Plate | Plasmid Insertion | Colony Count |
|---|---|---|---|
| 1 (Main) | Yes | Yes | 100+ |
| 2 (Positive Control) | No | Yes | 100+ |
| 3 (Negative Control) | Yes | No | 15 |
