Team:Paris Saclay/modeling/fnr1.xml
From 2013.igem.org
<?xml version="1.0" encoding="ISO-8859-1"?>
<sim>
<yscale>1300</yscale>
<volume>0.7</volume> <timestep>0.0001</timestep> <alpha>7.4e-7</alpha>
<molecule name="PGV" quantity="50"/> <molecule name="PGVa"/> <molecule name="PGR" quantity="50"/> <molecule name="PGR1"/> <molecule name="PGR2"/> <molecule name="FNR" curve_show="true" curve_color="#0000FF" quantity="1226"/> <molecule name="FNRo"/> <molecule name="FNRoo"/> <molecule name="DFNR"/> <molecule name="DFNRa" curve_show="true" curve_color="#AAAA00"/> <molecule name="DFNR1"/> <molecule name="DFNR2"/> <molecule name="DFNR3"/> <molecule name="O2" const="true" adjustable="true" quantity="5000"/> <molecule name="PV" curve_show="true" curve_color="#00AA00"/> <molecule name="PR" curve_show="true" curve_color="#FF0000"/> <molecule name="DEG" quantity="100"/>
<reaction probability="0.05">
<in>FNR</in> <in>FNR</in> <out>DFNRa</out>
</reaction>
<reaction probability="0.05">
<in>DFNRa</in> <in>O2</in> <out>DFNR1</out>
</reaction> <reaction probability="0.05">
<in>DFNR1</in> <in>O2</in> <out>DFNR2</out>
</reaction> <reaction probability="0.05">
<in>DFNR2</in> <in>O2</in> <out>DFNR3</out>
</reaction> <reaction probability="0.05">
<in>DFNR3</in> <in>O2</in> <out>DFNR</out>
</reaction>
<reaction probability="0.005">
<in>DFNR</in> <out>FNRoo</out> <out>FNRoo</out>
</reaction> <reaction probability="1">
<in>FNRoo</in> <out>FNRo</out> <out>O2</out>
</reaction> <reaction probability="1">
<in>FNRo</in> <out>FNR</out> <out>O2</out>
</reaction>
<reaction probability="0.8">
<in>PGV</in> <in>DFNRa</in> <out>PGVa</out>
</reaction> <reaction probability="0.0001">
<in>PGVa</in> <out>PGV</out> <out>DFNRa</out>
</reaction>
<reaction probability="0.0001">
<in>PGVa</in> <out>PGVa</out> <out>PV</out>
</reaction>
<reaction probability="0.8">
<in>PGR</in> <in>DFNRa</in> <out>PGR1</out>
</reaction> <reaction probability="0.0001">
<in>PGR1</in> <out>PGR</out> <out>DFNRa</out>
</reaction>
<reaction probability="0.8">
<in>PGR1</in> <in>DFNRa</in> <out>PGR2</out>
</reaction> <reaction probability="0.0001">
<in>PGR2</in> <out>PGR1</out> <out>DFNRa</out>
</reaction>
<reaction probability="0.0001">
<in>PGR</in> <out>PGR</out> <out>PR</out>
</reaction> <reaction probability="0.0001">
<in>PGR1</in> <out>PGR1</out> <out>PR</out>
</reaction>
<reaction probability="0.1">
<in>DEG</in> <in>PV</in> <out>DEG</out>
</reaction> <reaction probability="0.1">
<in>DEG</in> <in>PR</in> <out>DEG</out>
</reaction>
</sim>