Team:BYU Provo/Notebook/CholeraDetection/Springexp/Period2/Dailylog

From 2013.igem.org

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<font size="4"> '''5/13/13''' </font>
<font size="4"> '''5/13/13''' </font>
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- Purified phage stock in [[Team:BYU Provo/Notebook/SmallPhage/Springexp/Period1/Exp/5.9 T7+ Liquid Culture Phage Concentration Test|5.9 T7+ Liquid Culture Phage Concentration Test #2]]
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-KK Today we ran our digested CRO insert on the low melt gel, and under the UV light we saw the band we were looking for. Clarisse excised the band and we performed a ligation reaction according to the protocol and using the vector that we had already run on a low-melt gel last Thursday. After incubating for 30 minutes at room temperature, we performed a transformation into DH5alpha. The selectable marker of pLAT is ampicillin.
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- Performed [[Team:BYU Provo/Notebook/SmallPhage/Springexp/Period2/Exp/5.13 Determining E coli concentration with spectrophotometer|5.13 Determining E coli Concentration with Spectrophotometer]]
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-KP We ran our low melt gel with our Cro insert. After 45 minutes, we put the gel under UV light and cut out the insert. We then performed a ligation of our vector and cro insert. After 30 min, we did a transformation and inserted our newly ligated plasmid into DH5alpha.
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- Started the registry for phage stock
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Revision as of 22:17, 5 June 2013


Cholera Detection May - June Notebook: May 13 - May 26 Daily Log



Overview
March-April
May-June
July-August
September-October


5/13/13

-KK Today we ran our digested CRO insert on the low melt gel, and under the UV light we saw the band we were looking for. Clarisse excised the band and we performed a ligation reaction according to the protocol and using the vector that we had already run on a low-melt gel last Thursday. After incubating for 30 minutes at room temperature, we performed a transformation into DH5alpha. The selectable marker of pLAT is ampicillin.

-KP We ran our low melt gel with our Cro insert. After 45 minutes, we put the gel under UV light and cut out the insert. We then performed a ligation of our vector and cro insert. After 30 min, we did a transformation and inserted our newly ligated plasmid into DH5alpha.


5/14/13

- Started two 5mL BL21 overnight at 6:00pm


5/15/13

- Completed 5.9 T7+ Liquid Culture Phage Concentration Test #2 by doing the spot test

- Performed 5.15 Titer Test on 5.3 T7 new Phage Stock to determine phage concentration and estimate dilution for applying mutagen

- Sorted LB plates made on May 8 and threw away the ones with obvious contamination


5/16/13

- Took plates from 5.15 out of incubation at around 4:00pm


5/17/13

- Determined that all LB plates from 5.8 had contamination

- Poured new LB plates

- Made x8 top agar


5/18/13

- Stacked up the LB plates made yesterday. No obvious sign of contamination seen.

- Threw away the 5.8 LB plates (the ones with contamination).


5/19/13

- Started two 5mL of E coli BL21 overnight

- Designed procedure for applying mutagen and selecting for T7


5/20/13

- Started T7 Mutagen Concentration Test

5.20 Mutagen Concentration Experiment

- Started T7 Minor Capsid Protein PCR

5.20 T7 Minor Capsid Protein PCR


5/21/13

- Started two 5mL E coli BL21 overnight at around 7:00pm


5/22/13

- Performed spot test for 5.20 Mutagen Concentration Experiment

- Ran agarose gel to confirm PCR product

5.20 T7 Minor Capsid Protein PCR


5/23/13

- Started two 25mL E coli BL21 liquid culture over night at around 6:00pm


5/24/13

- Proceeded with 5.20 Mutagen Concentration Experiment by performing preliminary selection using x8 top agar


5/25/13

- Took pictures in preparation for Progress Report