Team:Goettingen/Project

From 2013.igem.org

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<h2>Our project: </h2>
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<img src="https://static.igem.org/mediawiki/2013/e/eb/Fig1.png" style="float:right;width:50%" />
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<p>Our project is aimed at the development of  a simple screening system, which allows the rapid identification and characterization of substances that disturb c-di-AMP homeostasis in pathogenic bacteria. </p>
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<p> The principle of how such a screening  system could look like is illustrated in Figure 1.  The screening system will be established in the  non-pathogenic bacterium E. coli. </p>
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<p> First, we want to construct a promoter-reporter gene fusion which allows us to monitor  the activity of a transcription factor that only binds to a specific DNA sequence (operator) in the presence of c-di-AMP. The operator sequence will be placed between a constitutively  active promoter and a reporter gene, such as  lacZ  and  gfp  encoding the -galactosidase and  the green-fluorescent protein (GFP), respectively. </p>
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<p>  The activity of either of the two proteins is very easy to detect. Then, we will evaluate  whether binding of the transcription factor and  thus inhibition of the promoter-reporter gene  fusion can be controlled by exogenous c-di-AMP. </p>
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<p> Finally, we want to express a diadenylate cyclase  from  B. subtilis  to inhibit the promoter reporter gene fusion by endogenously synthesized c-di-AMP. There are two big advantages of using E. coli as a host for the development of a screening system to  identify antibacterial compounds that interfere  with c-di-AMP homoeostasis in Gram-positive pathogenic bacteria. </p>
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<p> First, c-di-AMP is not synthesized in  E. coli. Thus, compounds that inhibit c-di-AMP synthesis will specifically inhibit growth of Gram-positive bacteria. Second, the use of a nonpathogenic E. coli strain, which is easy to cultivate will keep the costs very low.</p>
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<p>  We are confident that our screening system will facilitate the identification of novel  antibacterial substances because any change  in the activity of the c-di-AMP-dependent  promoter-reporter gene fusion, either by inhibition of c-di-AMP synthesis or by activation  of DNA-binding activity of the transcription  factor  will indicate perturbation of c-di-AMP homeostasis.  </p>
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Revision as of 15:19, 17 June 2013

The beast and its Achilles heel:

 A novel target to fight multi-resistant pathogenic bacteria