SCU Weekly
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- | + | 6.8~6.15 | |
- | + | 1. Transformation of BBa_B0015, BBa_CO261 to psb1AK3 is successful | |
- | + | 2. Transformed pSB1T3, pSB1K3, pSB1C3, pSB1A3, BBa_I13504 and BBa_I13504. | |
- | + | 4. The bacteria precipitate transformed with pSB1C3 and pSB1A3 were red after centrifugation, the degree of red decreased in this order: pSB1K32 (red) - pSB1A3 (pink) - pSB1A3(tinge) - pSB1K3(yellow). | |
- | + | 5. Chloramphenicol was insoluble,and it was tested to be useless using DH5α. | |
- | + | 6. Prepare A + , K + ,T + ,C + plates and antibiotic store liquor. | |
- | + | 7. Digested and assembled BBa_CO261, pSB1C3, then transformed them | |
- | + | 9. Digestion of BBa_I13504 and BBa_B0015, and results proved that the transformation was successful | |
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- | + | 6.16~6.22 | |
+ | 1. PCR to amplify 8B but failed. | ||
+ | 2. Chloramphenicol was tested to be effective | ||
+ | 3. Transformed pSB1T3, BBa_CO261, BBa_B0015, BBa_I13504, pSB1K3 (pSB1K3) and pSB1A3(pSB1A3) | ||
+ | 4. Plasmid extraction of BBa_F2622 + BBa_CO261 | ||
+ | 5. Digested BBa_F2622 + BBa_CO261 and pSB1T3 ( EcoRⅠand PstⅠ) | ||
+ | 6. Assembled BBa_F2622 + BBa_CO261, BBa_B0015 and pSB1T3 | ||
- | + | 6.23~6.29 | |
- | + | 1. Strain conservation of BBa_F2622 + BBa_CO261, pSB1C3 | |
- | + | 2. Prepared ddH2O | |
+ | 3. Added 1µl Dpn Ӏ into pSB1T3 (pSB1T3) reaction system when digesting | ||
+ | 6.30~7.6 | ||
+ | 1. Digested BBa_F2622 + BBa_CO261 and pSB1T3 ( EcoRⅠand PstⅠ) | ||
+ | 2. Assembled BBa_F2622 + BBa_CO261, BBa_I13504, and pSB1T3, but failed to transform them | ||
- | + | 7.7~7.13 | |
+ | 1. Plated BBA_F2622 + BBa_CO261 + BBa_I13504 (1.2.3) and BBA_F2622 + BBa_CO261 + BBa_B0015 (1.2.3) which were assembled last week but failed. | ||
+ | 2. Cultured BBa_B0015 1 and 2 | ||
- | + | 7.14~7.20 | |
- | + | 1. No much experiment | |
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- | + | 7.21~7.27 | |
- | + | 1. Failed to amplify pSB1K3, pSB1A3, pSB1C3 through PCR | |
- | + | 2. Transformed BBa_I61046 (RBS + Cre), K5-R0040 and they were successful | |
- | + | 3. Extracted plasmid of pSB1T3, BBA_F2622 + BBa_CO261 and only pSB1T3was successful | |
- | + | 4. Incubated BBa_R0040, BBa_F2622 + BBa_CO261 + BBa_I13504, BBA_F2622 + BBa_CO261 + BBa_B0015 | |
+ | 5. Successfully assembled BBA_F2622 + BBa_CO261 + BBa_I13504, BBA_F2622 + BBa_CO261 + BBa_B0015 | ||
+ | RePCR by taq enzyme, we got experiences: | ||
+ | Taq is suitable for amplifying snippets of 2kb in size, and the reaction is fast | ||
+ | 10X taq buffer with (NH4)2SO4 reduces nonspecification | ||
+ | 2mM Mg2 + is suitable for taq | ||
+ | Avoid DNA pollution during template preparation | ||
+ | No pollution of raw material, it would be better to operate on the laminar | ||
+ | Negative control is necessary. | ||
- | + | 7.28~8.2 | |
+ | 1. Recovered PCR product of 27th | ||
+ | 2. Assembled BBa_F2622 + BBa_CO261 + BBa_I13504, BBa_F2622 + BBa_CO261 + BBa_B0015 with pSB1C3 carrier, then did transformation and incubate | ||
+ | 3. Incubated R0040, pSB1T3, BBa_R0062, BBa_F2622 + BBa_CO261, BBa_B0015 | ||
+ | 4. Replated BBa_F2622 + BBa_CO261 + BBa_I13504, BBa_F2622 + BBa_CO261 + BBa_B0015 | ||
+ | 5. Digested BBa_R0040, BBa_R0062, BBa_J61064 | ||
+ | 6. Assembled BBa_R0062with BBa_J61064, then did transformation | ||
- | + | 8.3~8.10 | |
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+ | 1. Incubated BBa_R0062+BBa_J61064, and gel analysis of plasmid extraction and digestion products proved that the ligation was successful | ||
+ | 2. Transformed BBa_I746361, BBa_K145215, BBa_K145215. | ||
+ | 3. Digested BBa_R0062, BBa_J61064, pSB1C3, and assembled them overnight | ||
- | + | 8.11~8.17 | |
+ | 1. Transformed, BBa_I746361, BBa_K145215,BBa_J23032,BBa_F2622 + BBa_CO261 | ||
+ | 2. Extracted plasmid of BBa_K145215, BBa_F2622 + BBa_CO261 | ||
+ | 3. Digested BBa_K145215, BBa_CO261, BBa_F2622 + BBa_CO261, | ||
+ | 4. Incubated BBa_F2622,BBa_J23032 | ||
+ | 5. Sent BBa_K145215, BBA_F2622 to biotech company to sequence them. | ||
- | + | 8.18~8.24 | |
- | + | 1. Assembled BBa_R0040 + BBa_J23032 (Ptet + lock), PO + LOX + BBa_R0040 | |
- | + | 2. Transformed BBa_R0062 + BBa_I718008, BBa_F2622 + BBa_CO261, BBa_R0040 + BBa_J23032 | |
- | + | 3. Incubated BBa_R0040 + BBa_J23032, BBa_R0062 + BBa_I718008 | |
- | + | 4. Extracted plasmid of BBa_J23032, B0034(strong RBS, BBa_R0040 + BBa_J23032, BBa_R0062 + Cre and then did digestion. | |
- | + | 5. Digested BBa_I718008, BBa_R0062 + BBa_I718008, BBa_B0034. | |
- | + | 6. Sent BBa_R0062 + BBa_I718008to sequence, however all turned out to be wrong, so we need to reassembly them. | |
- | + | 7. Sent BBa_R0040 + BBa_J23032, to sequence | |
- | + | 8. Amplified BBa_I746361 through PCR | |
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+ | 8.25~8.31 | ||
+ | 1. Digested BBa_R0040 + BBa_J23032 and BBa_F2622 + BBa_B0015, BBa_R0062 + BBa_I718008 | ||
+ | 2. Designed primer of APO | ||
+ | 3. Failed to PCR Cre + ssrA | ||
+ | 4. Transformed BBa_R0040 + PO, | ||
+ | 5. Recultured BBa_R0062 + BBa_I718008, BBA_F2622 + BBa_CO261 | ||
+ | 6. Single digested BBA_F2622 + BBa_B0015,R0040 + Po, compared with previous single digested BBa_B0015, but failed. | ||
+ | 7. Redigested BBa_B0015, then did ligation and transformation. | ||
+ | 8. Sent to sequence: BBa_R0040 + BBa_J23032, BBa_R0062 + BBa_I718008, R0040 + Po, | ||
+ | 9. Recovered BBa_B0015 and BBa_R0040 from conservation | ||
- | + | 9.1~9.7 | |
+ | 1. succeeded in amplifying Cre + ssrA by PCR | ||
+ | 2. Digested BBa_R0040, pSB1C3, pSB1K3, pSB1A3, pSB1T3, BBa_R0062 + BBa_I718008, BBA_F2622 + BBa_CO261, Cre + BBa_B0015, PCRed BBA_F2622 + BBa_B0015, BBA_F2622 + BBa_B0015 + R0040 + J23032 | ||
+ | 3.Assembled BBa_I718008 + BBa_B0015, BBa_F2622 + BBa_CO261(pSB1C3), R0040 + J23032 + BBA_F2622 + BBa_B0015(pSB1T3), BBa_R0040 + po + BBa_I13507 (pSB1T3), RBS + BBa_I718008 + ssrA (pSB1C3) ,BBa_F2622 + BBa_B0015 (pSB1C3) BBa_R0040 + BBa_I13504 (pSB1C3), BBa_I746361 + BBa_I13504 (pSB1C3), BBa_R0040 → BBa_B0015 (pSB1C3), then transformed them. | ||
+ | 4. Cultured BBa_R0062 + BBa_I718008 | ||
+ | 5. Digested pSB1C3, pSB1K3, pSB1A3, pSB1T3, BBa_R0062 + BBa_I718008, BBa_F2622 + BBa_CO261 | ||
+ | 6. Transformed Cre + BBa_B0015, pSB1A2, BBa_J04650 | ||
+ | 7. Transformed pSB1A2, BBa_J04650 | ||
+ | 8. Sent to sequence: BBa_R0062 + BBa_I718008, BBa_F2622 + BBa_B0015 → 1B0034 | ||
+ | 9. Did gel extraction RBS + Cre + ssrA | ||
- | + | 9.8~9.14 | |
- | + | 1. Digested BBa_I13507, pSB1C3, BBa_R0040 + Po, BBa_R0040 + po + BBa_I13507 | |
- | + | 2. Incubated BBa_R0040→BBa_B0015 | |
- | + | 3. Assembled BBa_R0040 + po + BBa_I13507, BBa_R0040 + BBa_J23032 + BBa_J04650, BBa_R0040 + po + BBa_I13507 | |
- | + | 4. Sent to sequence: BBa_B0034→BBa_B0015, BBa_R0040→BBa_B0015, BBa_R0040 + PO + BBa_I13507 | |
- | + | 5.96-well plates experiment of BBa_R0040 + PO | |
- | + | 6. Cultured BBa_R0040 + BBa_I13504 and observed its fluorescence | |
- | + | 7. Transformed BBa_R0040 + BBa_J23032 + BBa_J04650, BBa_R0040 + Po + BBa_I13507 | |
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+ | 9.15~9.21 | ||
+ | 1. Miniprep: BBa_I746361 + BBa_I13507, BBa_R0040 + BBa_ J23032 + BBa_J04650, BBa_R0040 + Po + BBa_I13507, BBa_I746361 + BBa_I13507, BBa_I746361 + BBa_I13507 + BBa_R0040→BBa_B0015, BBa_K145215 + BBa_R0040 + BBa_J23032 + BBa_J04650, BBa_I746361 + BBa_I13507 + BBa_R0040 + BBa_J23032 + BBA_F2622 + BBa_B0015 + BBa_K145215, BBa_R0040 + Po + BBa_I13507, BBa_I746361→BBa_B0015 + BBa_K145215, BBa_I13521, BBa_K145215 + BBa_R0040 + BBa_J23032 + BBa_J04650 | ||
+ | 2. Digestion: BBa_I746361 + BBa_I13507, BBa_I746361 + BBa_I13507 + BBa_R0040→BBa_B0015, BBa_K145215 + BBa_R0040 + BBa_J23032 + BBa_J04650, BBa_R0040 + Po + BBa_I13507, BBa_R0040 + Po + BBa_I13507, BBa_I746361→BBa_B0015 + BBa_K145215 | ||
+ | 3. Incubate: BBa_I746361 + BBa_I13507, BBa_I746361 + BBa_I13507 + BBa_R0040→BBa_B0015, BBa_I718008 + Po + BBa_I13507, BBa_R0040 + BBa_J23032 + BBa_J04650, BBa_K145215 + BBa_R0040 + BBa_J23032 + BBa_J04650, BBa_R0040, BBa_K145215 + BBa_B0034 + BBa_J23032 + BBa_B0015, R0040 + Po + BBa_I13507 | ||
+ | 4. Prepared A + and T + plates | ||
+ | 5. Assembled BBa_I746361→BBa_B0015 + BBa_K145215 and BBa_R0040 + BBa_I13507, then did transformation | ||
+ | 6. Function test: BBa_K145215 + BBa_R0040 + BBa_J23032 + BBa_J04650, BBa_R0040 + BBa_J23032 + BBa_J04650, BBa_R0040 + BBa_J23032 + BBa_J04650 + BBa_K145215, BBa_I13521, BBa_I746361 + BBa_I13507, BBa_I746361 + BBa_I13507 + BBa_R0040→BBa_B0015, BBa_R0040 + Po + BBa_I13507 | ||
+ | 7. Gel extraction of BBa_R0040 + Po + BBa_I13507 | ||
+ | 8. Sent BBa_R0040 + BBa_J23032 + BBa_J04650 + BBa_K145215, BBa_I746361 + BBa_I13507 + BBa_R0040→BBa_B0015 to sequence | ||
- | + | 9.22-9.28 | |
+ | 1. Prepare LB incubate and LB plates | ||
+ | 2. Incubated BBa_B0034→BBa_B0015, and then extracted plasmid | ||
+ | 4. Digested BBa_I13521, BBa_I718008, BBa_B0034→BBa_B00155. Gel extraction of BBa_I718008, and BBa_I13507 | ||
+ | 6. Function test of BBa_I13521, BBa_I746361→BBa_B0015, BBa_I746361→ BBa_K145215, BBa_I746361 + BBa_I13507 | ||
+ | 7. PCR BBa_I13507 | ||
+ | 8. Assembled BBa_I718008 and BBa_B0034→BBa_B0015 | ||
Revision as of 03:50, 28 September 2013