Team:UNITN-Trento/Parts

From 2013.igem.org

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<link rel="stylesheet" href="https://2013.igem.org/wiki/index.php?title=Team:UNITN-Trento/CSS/Project_pages&action=raw&ctype=text/css" type="text/css" />
<link rel="stylesheet" href="https://2013.igem.org/wiki/index.php?title=Team:UNITN-Trento/CSS/Project_pages&action=raw&ctype=text/css" type="text/css" />
<link rel="stylesheet" href="https://2013.igem.org/wiki/index.php?title=Team:UNITN-Trento/CSS/Parts&action=raw&ctype=text/css" type="text/css" />
<link rel="stylesheet" href="https://2013.igem.org/wiki/index.php?title=Team:UNITN-Trento/CSS/Parts&action=raw&ctype=text/css" type="text/css" />
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<script type="text/javascript" src="https://2013.igem.org/Team:UNITN-Trento/JS/Parts?action=raw&ctype=text/javascript"></script>
 
<!-- Page -->
<!-- Page -->
<div class="tn-parts-container">
<div class="tn-parts-container">
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     <div class="menu">
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     <div class="legend">
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        <div class="sheet">
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            <p>
 +
                In this beautiful page you can find <i>the fruits</i> of our summer’s efforts, otherwise you can just go to the <a href="http://parts.igem.org/cgi/partsdb/pgroup.cgi?pgroup=iGEM2013&group=UNITN-Trento" target="_blank">official page</a>.
 +
            <p>
 +
                The number of bananas indicates:
 +
            </p>
 +
            <ul>
 +
                <li><img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />: This is an intermediate part and it has not been characterized.</li>
 +
 
 +
                <li><img src="https://static.igem.org/mediawiki/2013/1/1e/Tn-2013-parts-Banana-green-parts.png" />: the part does not work, due to a mistake of some kind, or we do not know if it works and more tests must be performed. </li>
 +
                <li><img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" /><img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />: the part was characterized but doesn't work always as expected.</li>
 +
                <li><img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" /><img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" /><img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />: the part works as expected and has been characterized.</li>
 +
 
 +
            </ul>
 +
            <p style="margin-bottom: 0;">
 +
                <i>&#9835; &#9834; “One banana, two bananas, three bananas, four. Four bananas make a bunch and so do many more.” &#9834; &#9835;</i>
 +
            </p>
 +
            <p style="margin-top: 0; text-align: right;">
 +
                [cit. The Banana Splits – <i>The Tra La La Song</i>]
 +
            </p>
 +
        </div>
     </div>
     </div>
     <div class="content">
     <div class="content">
         <!-- Ethylene -->
         <!-- Ethylene -->
         <div class="box">
         <div class="box">
-
             <div class="label">
+
             <div id="label1" class="label">
             </div>
             </div>
-
             <span class="title">Ethylene</span>
+
             <span class="title"><a id="eth">Ethylene</a></span>
             <div class="part-box">
             <div class="part-box">
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065000</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065000">BBa_K1065000</a></td>
                         <td class="name">EFE</td>
                         <td class="name">EFE</td>
                     </tr>
                     </tr>
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                 <table>
                 <table>
                     <tr>
                     <tr>
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                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
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                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065002</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065002">BBa_K1065002</a></td>
                         <td class="name">EFE with double-terminator</td>
                         <td class="name">EFE with double-terminator</td>
                     </tr>
                     </tr>
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                 <table>
                 <table>
                     <tr>
                     <tr>
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                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
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                         <td rowspan="2" class="grade">
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                         <td class="code">BBa_K1065001</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
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                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065001">BBa_K1065001</a></td>
                         <td class="name">EFE arabinose-regulated</td>
                         <td class="name">EFE arabinose-regulated</td>
                     </tr>
                     </tr>
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         <!-- Methyl salicylate -->
         <!-- Methyl salicylate -->
         <div class="box">
         <div class="box">
-
             <div class="label">
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             <div id="label2" class="label">
             </div>
             </div>
-
             <span class="title">Methyl salicylate</span>
+
             <span class="title"><a id="mesa">Methyl salicylate</a></span>
             <div class="part-box">
             <div class="part-box">
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
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                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065100</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065100">BBa_K1065100</a></td>
                         <td class="name">BSMT1</td>
                         <td class="name">BSMT1</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             This part encodes the BSMT1, it is the enzyme that methylates salycilic acid to obtain methyl salycilate. It’s the original part from the Eau de coli MIT iGEM 2006 project, resubmitted by us in pSB1C3.
+
                             This part encodes BSMT1, an enzyme that methylates salycilic acid to obtain methyl salycilate. It is the original part from the '<i>Eau de coli</i>' MIT iGEM 2006 project, re-submitted (<i>and resurrected</i>) by us in pSB1C3.
                         </td>
                         </td>
                     </tr>
                     </tr>
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                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
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                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065103</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065103">BBa_K1065103</a></td>
                         <td class="name">PchBA</td>
                         <td class="name">PchBA</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             PchA ,the enzyme catalyzing salicylate biosynthesis isochorismate, and PchB that is the isochorismate-pyruvate lyase for that form the precursor for the salycilic acid.
+
                             PchA is the enzyme responsible for the formation of isochorismate from chorismate. The next step is performed by the PchB enzyme, which converts isochorismate in salicylic acid. This is another part from the '<i>Eau de coli</i>' MIT iGEM 2006 project that we re-submitted (<i>and resurrected</i>) in pSB1C3.
                         </td>
                         </td>
                     </tr>
                     </tr>
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                 <table>
                 <table>
                     <tr>
                     <tr>
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                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
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                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065104</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065104">BBa_K1065104</a></td>
                         <td class="name">SAM synthetase</td>
                         <td class="name">SAM synthetase</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             This part encodes the SAM (S-AdoMet) synthetase gene, (which we friendly called "uncle SAM") . It is a methyl donor required to produce MeSA and other methylated molecules.
+
                             This part encodes the SAM (S-AdoMet) synthetase gene, which we friendly call "uncle SAM". SAM is a methyl donor required to produce MeSA and other methylated molecules.
                         </td>
                         </td>
                     </tr>
                     </tr>
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                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065101</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065101">BBa_K1065101</a></td>
                         <td class="name">BSMT1 arabinose-regulated</td>
                         <td class="name">BSMT1 arabinose-regulated</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             A methyltransferase (BSMT1) regulated by the araCpBAD inducible promoter.  
+
                             A methyltransferase (BSMT1) regulated by the araCpBAD promoter.  
                         </td>
                         </td>
                     </tr>
                     </tr>
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                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">Bba_K1065105</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
-
                         <td class="name">SAM synthetase IPTG-regulated</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065105">BBa_K1065105</a></td>
 +
                         <td class="name">SAM synthetase under pLac promoter</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             This is EFE followed by a double terminator (B0015) under the control of the araCpBAD inducible promoter.
+
                             This is SAM synthetase (<i>uncle SAM</i>) regulated by the constitutive Lac promoter.
                         </td>
                         </td>
                     </tr>
                     </tr>
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                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065102</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
-
                         <td class="name">PchBA IPTG-regulated and BSMT1 arabinose-regulated</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065102">BBa_K1065102</a></td>
 +
                         <td class="name">PchBA under pLac and BSMT1 arabinose-regulated</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             This is EFE followed by a double terminator (B0015) under the control of the araCpBAD inducible promoter.
+
                             The wintergreen device: PchBA under a Lac promoter followed by BSMT1 under the araCpBAD promoter.
                         </td>
                         </td>
                     </tr>
                     </tr>
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                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065106</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065106">BBa_K1065106</a></td>
                         <td class="name">BSMT1, PchBA and SAM synthetase</td>
                         <td class="name">BSMT1, PchBA and SAM synthetase</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             An improved version of the wintergreen device with BMST1, PCHBA (BBa_K1065102) with added SAM synthetase enzymes to boost wintergreen production.
+
                             An improved version of the wintergreen device: BBa_K1065102 with SAM synthetase to boost production.
                         </td>
                         </td>
                     </tr>
                     </tr>
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         <!-- Blue light -->
         <!-- Blue light -->
         <div class="box">
         <div class="box">
-
             <div class="label">
+
             <div id="label3" class="label">
             </div>
             </div>
-
             <span class="title">Blue light</span>
+
             <span class="title"><a id="blue">Blue light</a></span>
             <div class="part-box">
             <div class="part-box">
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">Bba_K1065301</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
-
                         <td class="name">amilCP IPTG-regulated</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065302">BBa_K1065302</a></td>
 +
                         <td class="name">Blue light circuit to produce amilGFP</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             We attached pLac promoter to amilCP gene. This part does not work (sadly we saw no blue color). In fact, we started from BBa_K592009 which lacks the RBS (it is a coding part). <i>No RBS, no party!</i>
+
                             A device to characterize our improved part BBa_K1065305 controlled by pLac promoter.
                         </td>
                         </td>
                     </tr>
                     </tr>
Line 201: Line 256:
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">Bba_K1065300</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
-
                         <td class="name">BBa_K952003 with Yf1 and FixJ IPTG-regulated.</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065305">BBa_K1065305</a></td>
 +
                         <td class="name">BBa_K952003 improved</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             pLac+Yf1-FixJ-pFixK2-amil GFP without RBS and with pLac upstream.
+
                             No rbs, no party!!!!We improved BBa_K952003 by mutagenesis to add the missing RBS, now the part works.  
                         </td>
                         </td>
                     </tr>
                     </tr>
Line 216: Line 275:
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065303</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
-
                         <td class="name">Yf1+FixJ+pFixK2</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065309">BBa_K1065309</a></td>
 +
                         <td class="name">Blue light ethylene producing device</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             The starting point to build a blue-light sensing circuit: the photosensor, the response regulator with its promoter. This part was build merging BBa_K592016 and BBa_K592006.
+
                             Complete blue-light sensing circuit without inverter, producing both amilGFP and EFE.
                         </td>
                         </td>
                     </tr>
                     </tr>
Line 231: Line 293:
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065310</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
-
                         <td class="name">Yf1+FixJ+pFixK2+Inverter+pLambda+amilCP</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065310">BBa_K1065310</a></td>
 +
                         <td class="name">Complete blue-light sensing circuit with an inverter</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             This is a complete blue-light sensing circuit, inverted with cI. Yf1 and FixJ are under the Anderson promoter (BBa_J23100). pLambda regulates the expression of the reporter gene amilCP. When exposed to blue-light, amilCP is synthesized, when the blue-light is not present, amilCP is not produced.
+
                             Yf1 and FixJ are regulated by the Anderson promoter (BBa_J23100). pLambda regulates the expression of the reporter gene amilCP. When exposed to blue-light, amilCP is synthesized, when the blue-light is not present, amilCP is not produced.
                         </td>
                         </td>
                     </tr>
                     </tr>
Line 246: Line 312:
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065302</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
-
                         <td class="name">BBa_K1065300 improved</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
 +
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065311">BBa_K1065311</a></td>
 +
                         <td class="name">Complete blue-light sensing device with inverter, amilCP and EFE</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             The same as BBa_K1065300: we performed a mutagenesis to add the missing RBS, now this works!!! It is: pLac+Yf1+FixJ+pFixK2+amilGFP.
+
                             Our complete circuit composed by:J23100, Yf1 and FixJ, pFixK2, CI, pLambda, amilCP and EFE.
                         </td>
                         </td>
                     </tr>
                     </tr>
Line 261: Line 330:
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065305</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
-
                         <td class="name">BBa_K952003 improved</td>
+
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065306">BBa_K1065306</a></td>
 +
                         <td class="name">J23100+Yf1+FixJ</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             The same as BBa_K952003: we performed a mutagenesis to add the missing RBS, now this works!!! It is: Yf1+FixJ+pFixK2+amilGFP.
+
                             Yf1 (photosensor) and FixJ (response regulator) under the Anderson promoter (BBa_J23100).
                         </td>
                         </td>
                     </tr>
                     </tr>
Line 276: Line 347:
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065306</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
-
                         <td class="name">J23100+Yf1+FixJ</td>
+
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065307">BBa_K1065307</a></td>
 +
                         <td class="name">J23100+Yf1+FixJ (with terminators)</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             Yf1 and FixJ under the Anderson promoter (BBa_J23100).
+
                             The same as BBa_K1065306, just with the terminators at the end. This part was not submitted to the registry. If you are interested please contact us.
                         </td>
                         </td>
                     </tr>
                     </tr>
Line 291: Line 364:
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065204</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
-
                         <td class="name">pXyl+EFE</td>
+
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065308">BBa_K1065308</a></td>
 +
                         <td class="name">BBa_K1065307 with inverter</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             EFE in pXyl vector, specific for B. subtilis.  
+
                             This is an intermediate part to build a blue light inducible genetic circuit with the inverter. This part is in pSB1A2 and it was not submitted to the registry. If you are interested in this part please contact us.
                         </td>
                         </td>
                     </tr>
                     </tr>
Line 306: Line 381:
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065309</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/10/Tn-2013-parts-Banana-parts.png" />
-
                         <td class="name">BBa_K1065302+BBa_K1065002</td>
+
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065303">BBa_K1065303</a></td>
 +
                         <td class="name">Yf1+FixJ+pFixK2</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             Complete blue-light sensing circuit without inverter, producing both amilGFP and EFE.
+
                             The starting point to build a blue-light sensing circuit: the photosensor (Yf1) and the response regulator (FixJ) with its promoter (pFixK2). This part was build merging BBa_K592016 and BBa_K592006.
                         </td>
                         </td>
                     </tr>
                     </tr>
                 </table>
                 </table>
             </div>
             </div>
-
 
-
        </div>
 
-
        <!-- Bacillus -->
 
-
        <div class="box">
 
-
            <div class="label">
 
-
            </div>
 
-
            <span class="title">Bacillus</span>
 
             <div class="part-box">
             <div class="part-box">
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065201</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/1e/Tn-2013-parts-Banana-green-parts.png" />
-
                         <td class="name">pXyl+GFP</td>
+
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065300">BBa_K1065300</a></td>
 +
                         <td class="name">Blue light circuit to produce amilGFP</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             An improved version of the wintergreen device with BMST1, PCHBA (BBa_K1065102) with added SAM synthetase enzymes to boost wintergreen production.
+
                             It does not work beacuse it lacks the RBS before the amilGFP gene.
                         </td>
                         </td>
                     </tr>
                     </tr>
                 </table>
                 </table>
             </div>
             </div>
 +
 +
        </div>
 +
        <!-- Bacillus -->
 +
        <div class="box">
 +
            <div id="label4" class="label">
 +
            </div>
 +
            <span class="title"><a id="bacillus"><i>Bacillus subtilis</i></a></span>
             <div class="part-box">
             <div class="part-box">
                 <table>
                 <table>
                     <tr>
                     <tr>
-
                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
+
                         <td rowspan="2" class="grade">
-
                         <td class="code">BBa_K1065106</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/1e/Tn-2013-parts-Banana-green-parts.png" />
-
                         <td class="name">BSMT1, PchBA and SAM synthetase</td>
+
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065201">BBa_K1065201</a></td>
 +
                         <td class="name">pXyl+GFP</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
-
                             A B. subtilis xylose inducible plasmid (from LMU Munich iGEM 2012) to produce GFPmut3b, regulated by a strong ribosome binding site (Bba_e0840).
+
                             A <i>B. subtilis</i> xylose inducible plasmid (from LMU Munich iGEM 2012) to produce GFPmut3b, regulated by a strong ribosome binding site (Bba_e0840).
                         </td>
                         </td>
                     </tr>
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                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
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                         <td rowspan="2" class="grade">
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                         <td class="code">BBa_K1065204</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/1e/Tn-2013-parts-Banana-green-parts.png" />
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                         <td class="name">pXyl+EFE</td>
+
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065203">BBa_K1065203</a></td>
 +
                         <td class="name">Efe+Bba_B0015 in pSpac.</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
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                             EFE in pXyl vector, specific for B. subtilis.  
+
                             EFE in pSpac vector, specific for <i>B. subtilis</i>.
                         </td>
                         </td>
                     </tr>
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                 <table>
                 <table>
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                         <td rowspan="2" class="grade">☺ ☺ ☺</td>
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                         <td rowspan="2" class="grade">
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                         <td class="code">BBa_K1065311</td>
+
                            <img src="https://static.igem.org/mediawiki/2013/1/1e/Tn-2013-parts-Banana-green-parts.png" />
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                         <td class="name">Complete blue-light sensing device with inverter, amilCP and EFE</td>
+
                        </td>
 +
                         <td class="code"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1065204">BBa_K1065204</a></td>
 +
                         <td class="name">pXyl+EFE</td>
                     </tr>
                     </tr>
                     <tr>
                     <tr>
                         <td colspan="2" class="descr">
                         <td colspan="2" class="descr">
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                             Our complete circuit composed by:J23100, Yf1 and FixJ, pFixK2, CI, pLambda, amilCP and EFE.
+
                             EFE in pXyl vector, specific for <i>B. subtilis</i>.  
                         </td>
                         </td>
                     </tr>
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    </div>
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</div>
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<div class="container">
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    <div class="sheet-2">
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        <a href="https://2013.igem.org/Team:UNITN-Trento/Modeling">
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            <img class="tn-arr-prev" src="https://static.igem.org/mediawiki/2013/b/be/Tn-2013-arr-Parts_prev.png" />
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        </a>
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        <a href="javascript:toTop('#tn-main-wrap-wrap');">
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            <img src="https://static.igem.org/mediawiki/2013/6/6e/Tn-2013-arr-AAA_TOP.png" />
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        </a>
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        <a href="https://2013.igem.org/Team:UNITN-Trento/Project/Datapage">
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            <img class="tn-arr-next" src="https://static.igem.org/mediawiki/2013/f/fb/Tn-2013-arr-Parts_next.png" />
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        </a>
     </div>
     </div>
</div>
</div>
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Latest revision as of 15:48, 4 October 2013

In this beautiful page you can find the fruits of our summer’s efforts, otherwise you can just go to the official page.

The number of bananas indicates:

  • : This is an intermediate part and it has not been characterized.
  • : the part does not work, due to a mistake of some kind, or we do not know if it works and more tests must be performed.
  • : the part was characterized but doesn't work always as expected.
  • : the part works as expected and has been characterized.

♫ ♪ “One banana, two bananas, three bananas, four. Four bananas make a bunch and so do many more.” ♪ ♫

[cit. The Banana Splits – The Tra La La Song]

Ethylene
BBa_K1065000 EFE
Ethylene Forming Enzyme gene (EFE) that forms ethylene starting from 2-oxoglutarate.
BBa_K1065002 EFE with double-terminator
EFE followed by the double terminator BBa_B0015.
BBa_K1065001 EFE arabinose-regulated
This is EFE followed by a double terminator (B0015) under the control of the araCpBAD inducible promoter.
Methyl salicylate
BBa_K1065100 BSMT1
This part encodes BSMT1, an enzyme that methylates salycilic acid to obtain methyl salycilate. It is the original part from the 'Eau de coli' MIT iGEM 2006 project, re-submitted (and resurrected) by us in pSB1C3.
BBa_K1065103 PchBA
PchA is the enzyme responsible for the formation of isochorismate from chorismate. The next step is performed by the PchB enzyme, which converts isochorismate in salicylic acid. This is another part from the 'Eau de coli' MIT iGEM 2006 project that we re-submitted (and resurrected) in pSB1C3.
BBa_K1065104 SAM synthetase
This part encodes the SAM (S-AdoMet) synthetase gene, which we friendly call "uncle SAM". SAM is a methyl donor required to produce MeSA and other methylated molecules.
BBa_K1065101 BSMT1 arabinose-regulated
A methyltransferase (BSMT1) regulated by the araCpBAD promoter.
BBa_K1065105 SAM synthetase under pLac promoter
This is SAM synthetase (uncle SAM) regulated by the constitutive Lac promoter.
BBa_K1065102 PchBA under pLac and BSMT1 arabinose-regulated
The wintergreen device: PchBA under a Lac promoter followed by BSMT1 under the araCpBAD promoter.
BBa_K1065106 BSMT1, PchBA and SAM synthetase
An improved version of the wintergreen device: BBa_K1065102 with SAM synthetase to boost production.
Blue light
BBa_K1065302 Blue light circuit to produce amilGFP
A device to characterize our improved part BBa_K1065305 controlled by pLac promoter.
BBa_K1065305 BBa_K952003 improved
No rbs, no party!!!!We improved BBa_K952003 by mutagenesis to add the missing RBS, now the part works.
BBa_K1065309 Blue light ethylene producing device
Complete blue-light sensing circuit without inverter, producing both amilGFP and EFE.
BBa_K1065310 Complete blue-light sensing circuit with an inverter
Yf1 and FixJ are regulated by the Anderson promoter (BBa_J23100). pLambda regulates the expression of the reporter gene amilCP. When exposed to blue-light, amilCP is synthesized, when the blue-light is not present, amilCP is not produced.
BBa_K1065311 Complete blue-light sensing device with inverter, amilCP and EFE
Our complete circuit composed by:J23100, Yf1 and FixJ, pFixK2, CI, pLambda, amilCP and EFE.
BBa_K1065306 J23100+Yf1+FixJ
Yf1 (photosensor) and FixJ (response regulator) under the Anderson promoter (BBa_J23100).
BBa_K1065307 J23100+Yf1+FixJ (with terminators)
The same as BBa_K1065306, just with the terminators at the end. This part was not submitted to the registry. If you are interested please contact us.
BBa_K1065308 BBa_K1065307 with inverter
This is an intermediate part to build a blue light inducible genetic circuit with the inverter. This part is in pSB1A2 and it was not submitted to the registry. If you are interested in this part please contact us.
BBa_K1065303 Yf1+FixJ+pFixK2
The starting point to build a blue-light sensing circuit: the photosensor (Yf1) and the response regulator (FixJ) with its promoter (pFixK2). This part was build merging BBa_K592016 and BBa_K592006.
BBa_K1065300 Blue light circuit to produce amilGFP
It does not work beacuse it lacks the RBS before the amilGFP gene.
Bacillus subtilis
BBa_K1065201 pXyl+GFP
A B. subtilis xylose inducible plasmid (from LMU Munich iGEM 2012) to produce GFPmut3b, regulated by a strong ribosome binding site (Bba_e0840).
BBa_K1065203 Efe+Bba_B0015 in pSpac.
EFE in pSpac vector, specific for B. subtilis.
BBa_K1065204 pXyl+EFE
EFE in pXyl vector, specific for B. subtilis.
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