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Team:Paris Bettencourt/Project/Target/FBA
From 2013.igem.org
(Difference between revisions)
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<td>ilvI ilvH ilvN ilvB ilvG_1 ilvG_2 ilvM </td> | <td>ilvI ilvH ilvN ilvB ilvG_1 ilvG_2 ilvM </td> | ||
<td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvI,ilvH,ilvN,ilvB,ilvG_1,ilvG_2,ilvM" target="_blank">Map</a></td> | <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvI,ilvH,ilvN,ilvB,ilvG_1,ilvG_2,ilvM" target="_blank">Map</a></td> | ||
| - | <td>valine | + | <td>valine biosynthetic process</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
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<td>fabZ fabA fabG fabF fabI fabB </td> | <td>fabZ fabA fabG fabF fabI fabB </td> | ||
<td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=fabZ,fabA,fabG,fabF,fabI,fabB" target="_blank">Map</a></td> | <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=fabZ,fabA,fabG,fabF,fabI,fabB" target="_blank">Map</a></td> | ||
| - | <td>fatty acid | + | <td>fatty acid biosynthetic process</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
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<td>malY metC </td> | <td>malY metC </td> | ||
<td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=malY,metC" target="_blank">Map</a></td> | <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=malY,metC" target="_blank">Map</a></td> | ||
| - | <td>transcription, DNA-dependent | + | <td>transcription, DNA-dependent</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
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<td>aroG aroH aroF </td> | <td>aroG aroH aroF </td> | ||
<td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=aroG,aroH,aroF" target="_blank">Map</a></td> | <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=aroG,aroH,aroF" target="_blank">Map</a></td> | ||
| - | <td>L-phenylalanine | + | <td>L-phenylalanine biosynthetic process</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
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<td>puuA glnA </td> | <td>puuA glnA </td> | ||
<td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=puuA,glnA" target="_blank">Map</a></td> | <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=puuA,glnA" target="_blank">Map</a></td> | ||
| - | <td>putrescine catabolic process | + | <td>putrescine catabolic process</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
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<td>ilvE tyrB </td> | <td>ilvE tyrB </td> | ||
<td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvE,tyrB" target="_blank">Map</a></td> | <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvE,tyrB" target="_blank">Map</a></td> | ||
| - | <td>valine | + | <td>valine biosynthetic process</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
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<td>pgm yqaB </td> | <td>pgm yqaB </td> | ||
<td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=pgm,yqaB" target="_blank">Map</a></td> | <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=pgm,yqaB" target="_blank">Map</a></td> | ||
| - | <td>glucose metabolic process | + | <td>glucose metabolic process</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
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<td>rpiA rpiB </td> | <td>rpiA rpiB </td> | ||
<td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=rpiA,rpiB" target="_blank">Map</a></td> | <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=rpiA,rpiB" target="_blank">Map</a></td> | ||
| - | <td>D-ribose metabolic | + | <td>D-ribose metabolic process</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
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<td>cysZ cysA cysW cysU cysP sbp </td> | <td>cysZ cysA cysW cysU cysP sbp </td> | ||
<td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=cysZ,cysA,cysW,cysU,cysP,sbp" target="_blank">Map</a></td> | <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=cysZ,cysA,cysW,cysU,cysP,sbp" target="_blank">Map</a></td> | ||
| - | <td>sulfur compound metabolic process | + | <td>sulfur compound metabolic process</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
Revision as of 09:35, 28 October 2013
E coli essential genes
Browse E. coli essential genes in EcoCyc here
List of predicted complementary knockouts
| M Tuberculosis essential gene(s) | BioCyc Link | E coli knockout(s) | BioCyc Link | Cellular Process |
|---|---|---|---|---|
| accD3 accD5 Rv3281 | Browse in Map | accA accD accB accC | Browse in Map | fatty acid biosynthetic process |
| argB | Browse in Map | argB | Browse in Map | arginine biosynthetic process |
| ilvG ilvN ilvB ilvB2 ilvX | Browse in Map | ilvI ilvH ilvN ilvB ilvG_1 ilvG_2 ilvM | Browse in Map | valine biosynthetic process |
| argD | Browse in Map | argD | Browse in Map | arginine biosynthetic process |
| cysD cysN | Browse in Map | cysC | Browse in Map | phosphorylation |
| purB | Browse in Map | purB | Browse in Map | purine nucleotide biosynthetic process |
| purB | Browse in Map | purB | Browse in Map | purine nucleotide biosynthetic process |
| purA | Browse in Map | purA | Browse in Map | purine nucleotide biosynthetic process |
| argC | Browse in Map | argC | Browse in Map | arginine biosynthetic process |
| ddlA | Browse in Map | ddlB ddlA | Browse in Map | peptidoglycan biosynthetic process |
| trpD | Browse in Map | trpD | Browse in Map | tryptophan biosynthetic process |
| trpE Rv2859c | Browse in Map | trpD trpE | Browse in Map | tryptophan biosynthetic process |
| asd | Browse in Map | asd | Browse in Map | homoserine biosynthetic process |
| pyrB | Browse in Map | pyrI pyrB | Browse in Map | pyrimidine nucleotide biosynthetic process |
| ask | Browse in Map | thrA metL lysC | Browse in Map | homoserine biosynthetic process |
| aspC aspB | Browse in Map | aspC | Browse in Map | L-phenylalanine biosynthetic process from chorismate via phenylpyruvate |
| hisG | Browse in Map | hisG | Browse in Map | histidine biosynthetic process |
| fabG2 inhA fas pks15 | Browse in Map | fabZ fabA fabG fabF fabI fabB | Browse in Map | fatty acid biosynthetic process |
| Rv1885c | Browse in Map | pheA tyrA | Browse in Map | L-phenylalanine biosynthetic process |
| aroF | Browse in Map | aroC | Browse in Map | chorismate biosynthetic process |
| cysM3 cysM cysK | Browse in Map | cysK cysM | Browse in Map | cysteine biosynthetic process from serine |
| metC | Browse in Map | malY metC | Browse in Map | transcription, DNA-dependent |
| lysA | Browse in Map | lysA | Browse in Map | cellular amino acid biosynthetic process |
| dapF | Browse in Map | dapF | Browse in Map | cellular amino acid biosynthetic process |
| aroG | Browse in Map | aroG aroH aroF | Browse in Map | L-phenylalanine biosynthetic process |
| ilvD | Browse in Map | ilvD | Browse in Map | valine biosynthetic process |
| dapB | Browse in Map | dapB | Browse in Map | diaminopimelate biosynthetic process |
| dapA | Browse in Map | dapA | Browse in Map | diaminopimelate biosynthetic process |
| dfrA | Browse in Map | folA | Browse in Map | 10-formyltetrahydrofolate biosynthetic process |
| pyrC | Browse in Map | pyrC | Browse in Map | pyrimidine nucleotide biosynthetic process |
| aroD | Browse in Map | aroD | Browse in Map | chorismate biosynthetic process |
| aroB | Browse in Map | aroB | Browse in Map | chorismate biosynthetic process |
| glmU | Browse in Map | glmU | Browse in Map | UDP-N-acetylglucosamine biosynthetic process |
| glmS | Browse in Map | glmS | Browse in Map | UDP-N-acetylglucosamine biosynthetic process |
| gmk | Browse in Map | gmk | Browse in Map | nucleobase-containing small molecule interconversion |
| glnA3 glnA glnA1 glnA2 glnA4 | Browse in Map | puuA glnA | Browse in Map | putrescine catabolic process |
| purF hisH | Browse in Map | purF | Browse in Map | purine nucleotide biosynthetic process |
| murI | Browse in Map | murI | Browse in Map | peptidoglycan biosynthetic process |
| guaA | Browse in Map | guaA | Browse in Map | GMP biosynthetic process |
| Rv3273 Rv3588c | Browse in Map | |can| cynT | Browse in Map | cyanate catabolic process |
| hisD | Browse in Map | hisD | Browse in Map | histidine biosynthetic process |
| hisC cobC hisC2 | Browse in Map | hisC | Browse in Map | histidine biosynthetic process |
| hisF | Browse in Map | hisH hisF | Browse in Map | histidine biosynthetic process |
| hisB | Browse in Map | hisB | Browse in Map | histidine biosynthetic process |
| trpC | Browse in Map | trpC | Browse in Map | tryptophan biosynthetic process |
| ilvE | Browse in Map | ilvE | Browse in Map | valine biosynthetic process |
| purH | Browse in Map | purH | Browse in Map | nucleobase-containing small molecule interconversion |
| guaB1 guaB3 guaB2 | Browse in Map | guaB | Browse in Map | nucleobase-containing small molecule interconversion |
| leuB | Browse in Map | leuB | Browse in Map | leucine biosynthetic process |
| leuD leuC | Browse in Map | leuD leuC | Browse in Map | leucine biosynthetic process |
| leuD leuC | Browse in Map | leuD leuC | Browse in Map | leucine biosynthetic process |
| leuA | Browse in Map | leuA | Browse in Map | leucine biosynthetic process |
| ilvC | Browse in Map | ilvC | Browse in Map | valine biosynthetic process |
| ilvC | Browse in Map | ilvC | Browse in Map | valine biosynthetic process |
| ilvE | Browse in Map | ilvE tyrB | Browse in Map | valine biosynthetic process |
| fadD37 fabD | Browse in Map | fabD | Browse in Map | fatty acid biosynthetic process |
| metK | Browse in Map | metK | Browse in Map | S-adenosylmethionine biosynthetic process |
| metH | Browse in Map | metE metH | Browse in Map | methionine biosynthetic process |
| ndkA | Browse in Map | ndk | Browse in Map | nucleobase-containing small molecule interconversion |
| ndkA | Browse in Map | ndk | Browse in Map | nucleobase-containing small molecule interconversion |
| argF | Browse in Map | argF argI | Browse in Map | arginine biosynthetic process |
| pyrF | Browse in Map | pyrF | Browse in Map | nucleobase-containing small molecule interconversion |
| umpA | Browse in Map | pyrE | Browse in Map | pyrimidine nucleotide biosynthetic process |
| murX | Browse in Map | mraY | Browse in Map | peptidoglycan biosynthetic process |
| cysH | Browse in Map | cysH | Browse in Map | sulfur compound metabolic process |
| Rv0728c serA | Browse in Map | serA | Browse in Map | L-serine biosynthetic process |
| pgmA | Browse in Map | pgm yqaB | Browse in Map | glucose metabolic process |
| ppa | Browse in Map | ppa | Browse in Map | phosphate-containing compound metabolic process |
| tyrA | Browse in Map | tyrA | Browse in Map | L-phenylalanine biosynthetic process |
| pheA | Browse in Map | pheA | Browse in Map | L-phenylalanine biosynthetic process |
| purD | Browse in Map | purD | Browse in Map | purine nucleotide biosynthetic process |
| purM | Browse in Map | purM | Browse in Map | purine nucleotide biosynthetic process |
| hisA | Browse in Map | trpC | Browse in Map | tryptophan biosynthetic process |
| hisI2 | Browse in Map | hisI | Browse in Map | histidine biosynthetic process |
| purC | Browse in Map | purC | Browse in Map | purine nucleotide biosynthetic process |
| hisI | Browse in Map | hisI | Browse in Map | histidine biosynthetic process |
| purQ purL | Browse in Map | purL | Browse in Map | purine nucleotide biosynthetic process |
| hisA | Browse in Map | hisA | Browse in Map | histidine biosynthetic process |
| prsA | Browse in Map | prs | Browse in Map | nucleotide biosynthetic process |
| aroA | Browse in Map | aroA | Browse in Map | chorismate biosynthetic process |
| serC | Browse in Map | serC | Browse in Map | L-serine biosynthetic process |
| serB serB2 | Browse in Map | serB | Browse in Map | L-serine biosynthetic process |
| rpi | Browse in Map | rpiA rpiB | Browse in Map | D-ribose metabolic process |
| dapE | Browse in Map | dapE | Browse in Map | cellular amino acid biosynthetic process |
| cysE | Browse in Map | cysE | Browse in Map | cysteine biosynthetic process from serine |
| aroE | Browse in Map | ydiB aroE | Browse in Map | chorismate biosynthetic process |
| aroK | Browse in Map | aroL aroK | Browse in Map | chorismate biosynthetic process |
| metZ metB | Browse in Map | metB | Browse in Map | methionine biosynthetic process |
| Rv1739c cysA cysW cysT subI | Browse in Map | cysZ cysA cysW cysU cysP sbp | Browse in Map | sulfur compound metabolic process |
| Rv1201c | Browse in Map | dapD | Browse in Map | lysine biosynthetic process |
| Rv2754c thyA | Browse in Map | thyA | Browse in Map | 10-formyltetrahydrofolate biosynthetic process |
| trxB2 | Browse in Map | trxB | Browse in Map | oxidation-reduction process |
| murE | Browse in Map | murE | Browse in Map | peptidoglycan biosynthetic process |
| murA | Browse in Map | murA | Browse in Map | peptidoglycan biosynthetic process |
| glmU | Browse in Map | glmU | Browse in Map | UDP-N-acetylglucosamine biosynthetic process |
| murG | Browse in Map | murG | Browse in Map | peptidoglycan biosynthetic process |
| murD | Browse in Map | murD | Browse in Map | peptidoglycan biosynthetic process |
| murC | Browse in Map | murC | Browse in Map | peptidoglycan biosynthetic process |
| murB | Browse in Map | murB | Browse in Map | peptidoglycan biosynthetic process |
| murF | Browse in Map | murF | Browse in Map | peptidoglycan biosynthetic process |
Table style from the HTML Table Generator
Centre for Research and Interdisciplinarity (CRI)
Faculty of Medicine Cochin Port-Royal, South wing, 2nd floor
Paris Descartes University
24, rue du Faubourg Saint Jacques
75014 Paris, France
+33 1 44 41 25 22/25
team2013@igem-paris.org
+33 1 44 41 25 22/25
team2013@igem-paris.org 
