Team:HIT-Harbin/Parts

From 2013.igem.org

(Difference between revisions)
Line 10: Line 10:
<h5>CODON OPTIMIZATION FOR HRPS AND HRPR GENE</h5>
<h5>CODON OPTIMIZATION FOR HRPS AND HRPR GENE</h5>
<p></p>hrpS gene sequence get from GeneBank
<p></p>hrpS gene sequence get from GeneBank
-
<p>ATGACGATAAGGAATAGCAATGAATCCGTGCAGTCACTTCATTGTGCCTCCCATGAGTCCTCGTTAACGCATCCGTCGGAAGATATACACGGATCGCTATCTTCTCTCATCCACACTATCGCGCCCCTCAACGTTGATATCGTACTGGAAGGCGAAACCGGCACCGGCAAAGACACGCTGGCGCGCCGTATTCATCAGCTTTCCGGCTGCGCCGGCCCGTTGGTGGCGGTGAACTGCGCCGCCGTGCCGGAAACGCTGGCGGAAAGCGAGTTATTCGGGGTGGTGTCCGGCGCTTACACCGGCGCCAGCCGGTCCCGCGCCGGATACCTTGAAACCGCGGACAAAGGCATTCTGTTTCTGGATGAGATCGACAGTATGCCGCTGACGCTGCAGGCCAAAATGTTACGGGTTCTGGAAAGTCGCGGCATCGAACGGCTGGGCAGCACCCAATTCAAACCGGTGGATATGCGGGTGATTGTCGCCACGCAGACGCCATTGCAGAAACTGGTGGACGAAGGGCGTTTTCGGCGTGACCTCTACTTCCGGCTGGATACGGTAAAAATTCAGCTGCCGACGCTGCGTTCGCGTACGGAAATCATTCTGCCGTTATTCGAGCGCTTTTTGCTCGAGGCCTCGGCCCGCCTGAAACGGCCGGCGCCGGGCCTGTCGGCCATCATTCAGGAACAACTGCTGATGCACGGCTGGCCCGGCAACATTCGTGAGTTGAAGGCGGCGGCCGAGCGCTGGGTGCTGGGGCTGTCGCCGGTGCCGATAGCCAGTGATGGCGACGTGCAGGTAATGGGAGAGGATACGCCGCTGACGTCGCTGAAAGTGCGCCTGCGCCGCATTGAGCGGTTTCTGATTCAGGAAGCGTTGCAGCGCAACGACCACTGTATCGATACGGTGGTGAATGAACTGGGCATTCCCAAACGCACGCTCTATCACCGCATCAAGCTGCTGAATGTGGCGGCGCGCGGGCTGTAATAA</p>
+
 
<p></p>CAI-Value of the sequence before optimization:0.2735861795565913
<p></p>CAI-Value of the sequence before optimization:0.2735861795565913
<p></p>GC-Content of the sequence before optimization:59.169199594731516
<p></p>GC-Content of the sequence before optimization:59.169199594731516
<p></p>hrpS gene sequence after codon optimization
<p></p>hrpS gene sequence after codon optimization
-
<p>ATGACCATCCGTAACTCTAACGAATCTGTTCAGTCTCTGCACTGCGCTTCTCACGAATCTTCTCTGACCCACCCGTCTGAAGACATCCACGGTTCTCTGTCTTCTCTGATCCACACCATCGCTCCGCTGAACGTTGACATCGTTCTGGAAGGTGAAACCGGTACCGGTAAAGACACCCTGGCTCGTCGTATCCACCAGCTGTCTGGTTGCGCTGGTCCGCTGGTTGCTGTTAACTGCGCTGCTGTTCCGGAAACCCTGGCTGAATCTGAACTGTTCGGTGTTGTTTCTGGTGCTTACACCGGTGCTTCTCGTTCTCGTGCTGGTTACCTGGAAACCGCTGACAAAGGTATCCTGTTCCTGGACGAAATCGACTCTATGCCGCTGACCCTGCAAGCTAAAATGCTGCGTGTTCTGGAATCTCGTGGTATCGAACGTCTGGGTTCTACCCAGTTCAAACCGGTTGACATGCGTGTTATCGTTGCTACCCAGACCCCGCTGCAAAAACTGGTTGACGAAGGTCGTTTCCGTCGTGACCTGTACTTCCGTCTGGACACCGTTAAAATCCAGCTGCCGACCCTGCGTTCTCGTACCGAAATCATCCTGCCGCTGTTCGAACGTTTCCTGCTGGAAGCTTCTGCTCGTCTGAAACGTCCGGCTCCGGGTCTGTCTGCTATCATCCAGGAACAGCTGCTGATGCACGGTTGGCCGGGTAACATCCGTGAACTGAAAGCTGCTGCTGAACGTTGGGTTCTGGGTCTGTCTCCGGTTCCGATCGCTTCTGACGGTGACGTTCAGGTTATGGGTGAAGACACCCCGCTGACCTCTCTGAAAGTTCGTCTGCGTCGTATAGAGAGGTTCCTGATCCAGGAGGCTCTGCAACGTAACGACCACTGCATCGACACCGTTGTTAACGAACTGGGTATCCCGAAACGTACCCTGTACCACCGTATCAAACTGCTGAACGTTGCTGCTCGTGGTCTGTAATAA</p>
+
 
<p></p>CAI-Value of the optimized sequence:0.9381699423093808
<p></p>CAI-Value of the optimized sequence:0.9381699423093808
<p></p>GC-Content of the optimized sequence:53.596757852077005
<p></p>GC-Content of the optimized sequence:53.596757852077005

Revision as of 12:43, 26 September 2013

HIT-Harbin

Parts

CODON OPTIMIZATION FOR HRPS AND HRPR GENE

hrpS gene sequence get from GeneBank

CAI-Value of the sequence before optimization:0.2735861795565913

GC-Content of the sequence before optimization:59.169199594731516

hrpS gene sequence after codon optimization

CAI-Value of the optimized sequence:0.9381699423093808

GC-Content of the optimized sequence:53.596757852077005

<groupparts>iGEM013 HIT-Harbin</groupparts>

Retrieved from "http://2013.igem.org/Team:HIT-Harbin/Parts"