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Team:UC Davis/Database/Standards
From 2013.igem.org
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<h1>Standards in the Depot</h1> | <h1>Standards in the Depot</h1> | ||
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| - | Although there have been differing methods of characterizing Biobricks, the vast majority of characterizations use the measurement of fluorescence and cell density in a microplate reader. The standards can | + | Although there have been differing methods of characterizing Biobricks, the vast majority of characterizations use the measurement of fluorescence and cell density in a microplate reader. The standards can accommodate some other types of characterizations, but are best suited to report characterization data as described. |
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<p><img src="https://static.igem.org/mediawiki/2013/c/cf/UCD_database_plate_layout.png" width=400px height=300px></p> | <p><img src="https://static.igem.org/mediawiki/2013/c/cf/UCD_database_plate_layout.png" width=400px height=300px></p> | ||
3. Standardized data file (csv), that reports your fluorescence and cell density measurements in the linked tabular format that is partly shown here.<p><img src="https://static.igem.org/mediawiki/2013/6/6e/UCD_fluo_celldensity.png" width=257px height=300px></p> | 3. Standardized data file (csv), that reports your fluorescence and cell density measurements in the linked tabular format that is partly shown here.<p><img src="https://static.igem.org/mediawiki/2013/6/6e/UCD_fluo_celldensity.png" width=257px height=300px></p> | ||
| - | 4. The metadata file (csv) | + | 4. The metadata file (csv) that reports information on your experiment's conditions and settings in the linked tabular format that is fully shown here.<br> |
| + | <p><img src="https://static.igem.org/mediawiki/2013/4/44/UCD_metadata_template.png"></p> | ||
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| + | The well-IDs follow the following naming system, where the columns are numbered and the rows are capitalized letters. | ||
| + | <p><img src="https://static.igem.org/mediawiki/2013/7/74/UCD_welID.png"></p> | ||
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The following standards for specific part types inherit the requirements above in addition to their further requirements. | The following standards for specific part types inherit the requirements above in addition to their further requirements. | ||
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<h3>Constitutive Promoters</h3> | <h3>Constitutive Promoters</h3> | ||
<p> | <p> | ||
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</p> | </p> | ||
Revision as of 03:39, 27 September 2013
Standards in the Depot
Although there have been differing methods of characterizing Biobricks, the vast majority of characterizations use the measurement of fluorescence and cell density in a microplate reader. The standards can accommodate some other types of characterizations, but are best suited to report characterization data as described.
All Part Types
Characterization for all part types require four files:
1. The raw data file (txt, csv, xls, xlx) from the output of your machine.
2. Standardized data file (csv) that reports your plate layout in the linked tabular format that is partly shown here.
The following standards for specific part types inherit the requirements above in addition to their further requirements.
Constitutive Promoters
Inducible Promoters
