Team:Paris Bettencourt/Project/Target/FBA

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Revision as of 09:33, 28 October 2013

PROJECT
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- TARGET
- INFILTRATE
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ACHIEVEMENTS
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NOTEBOOK
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@iGEM_Paris

E coli essential genes

Browse E. coli essential genes in EcoCyc here

List of predicted complementary knockouts

M Tuberculosis essential gene(s)	BioCyc Link	E coli knockout(s)	BioCyc Link	Cellular Process
accD3 accD5 Rv3281	Browse in Map	accA accD accB accC	Browse in Map	fatty acid biosynthetic process
argB	Browse in Map	argB	Browse in Map	arginine biosynthetic process
ilvG ilvN ilvB ilvB2 ilvX	Browse in Map	ilvI ilvH ilvN ilvB ilvG_1 ilvG_2 ilvM	Browse in Map	valine biosynthetic process, cellular amino acid biosynthetic process
argD	Browse in Map	argD	Browse in Map	arginine biosynthetic process
cysD cysN	Browse in Map	cysC	Browse in Map	phosphorylation
purB	Browse in Map	purB	Browse in Map	purine nucleotide biosynthetic process
purB	Browse in Map	purB	Browse in Map	purine nucleotide biosynthetic process
purA	Browse in Map	purA	Browse in Map	purine nucleotide biosynthetic process
argC	Browse in Map	argC	Browse in Map	arginine biosynthetic process
ddlA	Browse in Map	ddlB ddlA	Browse in Map	peptidoglycan biosynthetic process
trpD	Browse in Map	trpD	Browse in Map	tryptophan biosynthetic process
trpE Rv2859c	Browse in Map	trpD trpE	Browse in Map	tryptophan biosynthetic process
asd	Browse in Map	asd	Browse in Map	homoserine biosynthetic process
pyrB	Browse in Map	pyrI pyrB	Browse in Map	pyrimidine nucleotide biosynthetic process
ask	Browse in Map	thrA metL lysC	Browse in Map	homoserine biosynthetic process
aspC aspB	Browse in Map	aspC	Browse in Map	L-phenylalanine biosynthetic process from chorismate via phenylpyruvate
hisG	Browse in Map	hisG	Browse in Map	histidine biosynthetic process
fabG2 inhA fas pks15	Browse in Map	fabZ fabA fabG fabF fabI fabB	Browse in Map	fatty acid biosynthetic process, phosphatidic acid biosynthetic process, lipid biosynthetic process
Rv1885c	Browse in Map	pheA tyrA	Browse in Map	L-phenylalanine biosynthetic process
aroF	Browse in Map	aroC	Browse in Map	chorismate biosynthetic process
cysM3 cysM cysK	Browse in Map	cysK cysM	Browse in Map	cysteine biosynthetic process from serine
metC	Browse in Map	malY metC	Browse in Map	transcription, DNA-dependent, methionine biosynthetic process
lysA	Browse in Map	lysA	Browse in Map	cellular amino acid biosynthetic process
dapF	Browse in Map	dapF	Browse in Map	cellular amino acid biosynthetic process
aroG	Browse in Map	aroG aroH aroF	Browse in Map	L-phenylalanine biosynthetic process, tryptophan biosynthetic process, chorismate biosynthetic process
ilvD	Browse in Map	ilvD	Browse in Map	valine biosynthetic process
dapB	Browse in Map	dapB	Browse in Map	diaminopimelate biosynthetic process
dapA	Browse in Map	dapA	Browse in Map	diaminopimelate biosynthetic process
dfrA	Browse in Map	folA	Browse in Map	10-formyltetrahydrofolate biosynthetic process
pyrC	Browse in Map	pyrC	Browse in Map	pyrimidine nucleotide biosynthetic process
aroD	Browse in Map	aroD	Browse in Map	chorismate biosynthetic process
aroB	Browse in Map	aroB	Browse in Map	chorismate biosynthetic process
glmU	Browse in Map	glmU	Browse in Map	UDP-N-acetylglucosamine biosynthetic process
glmS	Browse in Map	glmS	Browse in Map	UDP-N-acetylglucosamine biosynthetic process
gmk	Browse in Map	gmk	Browse in Map	nucleobase-containing small molecule interconversion
glnA3 glnA glnA1 glnA2 glnA4	Browse in Map	puuA glnA	Browse in Map	putrescine catabolic process, ammonia assimilation cycle
purF hisH	Browse in Map	purF	Browse in Map	purine nucleotide biosynthetic process
murI	Browse in Map	murI	Browse in Map	peptidoglycan biosynthetic process
guaA	Browse in Map	guaA	Browse in Map	GMP biosynthetic process
Rv3273 Rv3588c	Browse in Map	\|can\| cynT	Browse in Map	cyanate catabolic process
hisD	Browse in Map	hisD	Browse in Map	histidine biosynthetic process
hisC cobC hisC2	Browse in Map	hisC	Browse in Map	histidine biosynthetic process
hisF	Browse in Map	hisH hisF	Browse in Map	histidine biosynthetic process
hisB	Browse in Map	hisB	Browse in Map	histidine biosynthetic process
trpC	Browse in Map	trpC	Browse in Map	tryptophan biosynthetic process
ilvE	Browse in Map	ilvE	Browse in Map	valine biosynthetic process
purH	Browse in Map	purH	Browse in Map	nucleobase-containing small molecule interconversion
guaB1 guaB3 guaB2	Browse in Map	guaB	Browse in Map	nucleobase-containing small molecule interconversion
leuB	Browse in Map	leuB	Browse in Map	leucine biosynthetic process
leuD leuC	Browse in Map	leuD leuC	Browse in Map	leucine biosynthetic process
leuD leuC	Browse in Map	leuD leuC	Browse in Map	leucine biosynthetic process
leuA	Browse in Map	leuA	Browse in Map	leucine biosynthetic process
ilvC	Browse in Map	ilvC	Browse in Map	valine biosynthetic process
ilvC	Browse in Map	ilvC	Browse in Map	valine biosynthetic process
ilvE	Browse in Map	ilvE tyrB	Browse in Map	valine biosynthetic process, leucine biosynthetic process
fadD37 fabD	Browse in Map	fabD	Browse in Map	fatty acid biosynthetic process
metK	Browse in Map	metK	Browse in Map	S-adenosylmethionine biosynthetic process
metH	Browse in Map	metE metH	Browse in Map	methionine biosynthetic process
ndkA	Browse in Map	ndk	Browse in Map	nucleobase-containing small molecule interconversion
ndkA	Browse in Map	ndk	Browse in Map	nucleobase-containing small molecule interconversion
argF	Browse in Map	argF argI	Browse in Map	arginine biosynthetic process
pyrF	Browse in Map	pyrF	Browse in Map	nucleobase-containing small molecule interconversion
umpA	Browse in Map	pyrE	Browse in Map	pyrimidine nucleotide biosynthetic process
murX	Browse in Map	mraY	Browse in Map	peptidoglycan biosynthetic process
cysH	Browse in Map	cysH	Browse in Map	sulfur compound metabolic process
Rv0728c serA	Browse in Map	serA	Browse in Map	L-serine biosynthetic process
pgmA	Browse in Map	pgm yqaB	Browse in Map	glucose metabolic process, dephosphorylation
ppa	Browse in Map	ppa	Browse in Map	phosphate-containing compound metabolic process
tyrA	Browse in Map	tyrA	Browse in Map	L-phenylalanine biosynthetic process
pheA	Browse in Map	pheA	Browse in Map	L-phenylalanine biosynthetic process
purD	Browse in Map	purD	Browse in Map	purine nucleotide biosynthetic process
purM	Browse in Map	purM	Browse in Map	purine nucleotide biosynthetic process
hisA	Browse in Map	trpC	Browse in Map	tryptophan biosynthetic process
hisI2	Browse in Map	hisI	Browse in Map	histidine biosynthetic process
purC	Browse in Map	purC	Browse in Map	purine nucleotide biosynthetic process
hisI	Browse in Map	hisI	Browse in Map	histidine biosynthetic process
purQ purL	Browse in Map	purL	Browse in Map	purine nucleotide biosynthetic process
hisA	Browse in Map	hisA	Browse in Map	histidine biosynthetic process
prsA	Browse in Map	prs	Browse in Map	nucleotide biosynthetic process
aroA	Browse in Map	aroA	Browse in Map	chorismate biosynthetic process
serC	Browse in Map	serC	Browse in Map	L-serine biosynthetic process
serB serB2	Browse in Map	serB	Browse in Map	L-serine biosynthetic process
rpi	Browse in Map	rpiA rpiB	Browse in Map	D-ribose metabolic process, D-allose catabolic process
dapE	Browse in Map	dapE	Browse in Map	cellular amino acid biosynthetic process
cysE	Browse in Map	cysE	Browse in Map	cysteine biosynthetic process from serine
aroE	Browse in Map	ydiB aroE	Browse in Map	chorismate biosynthetic process
aroK	Browse in Map	aroL aroK	Browse in Map	chorismate biosynthetic process
metZ metB	Browse in Map	metB	Browse in Map	methionine biosynthetic process
Rv1739c cysA cysW cysT subI	Browse in Map	cysZ cysA cysW cysU cysP sbp	Browse in Map	sulfur compound metabolic process, transport
Rv1201c	Browse in Map	dapD	Browse in Map	lysine biosynthetic process
Rv2754c thyA	Browse in Map	thyA	Browse in Map	10-formyltetrahydrofolate biosynthetic process
trxB2	Browse in Map	trxB	Browse in Map	oxidation-reduction process
murE	Browse in Map	murE	Browse in Map	peptidoglycan biosynthetic process
murA	Browse in Map	murA	Browse in Map	peptidoglycan biosynthetic process
glmU	Browse in Map	glmU	Browse in Map	UDP-N-acetylglucosamine biosynthetic process
murG	Browse in Map	murG	Browse in Map	peptidoglycan biosynthetic process
murD	Browse in Map	murD	Browse in Map	peptidoglycan biosynthetic process
murC	Browse in Map	murC	Browse in Map	peptidoglycan biosynthetic process
murB	Browse in Map	murB	Browse in Map	peptidoglycan biosynthetic process
murF	Browse in Map	murF	Browse in Map	peptidoglycan biosynthetic process

Table style from the HTML Table Generator

Centre for Research and Interdisciplinarity (CRI)
Faculty of Medicine Cochin Port-Royal, South wing, 2nd floor
Paris Descartes University
24, rue du Faubourg Saint Jacques
75014 Paris, France

+33 1 44 41 25 22/25

team2013@igem-paris.org

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@@ Line 44: / Line 44: @@
 	<th><i>E coli</i> knockout(s)</th>
 	<th>BioCyc Link</th>
+        <th>Cellular Process</th>
        </tr>
-      <tr>
        <tr>
          <td>accD3 accD5 Rv3281 </td>
@@ Line 51: / Line 51: @@
          <td>accA accD accB accC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=accA,accD,accB,accC" target="_blank">Map</a></td>
+        <td>fatty acid biosynthetic process</td>
        </tr>
        <tr>
@@ Line 57: / Line 58: @@
          <td>argB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=argB" target="_blank">Map</a></td>
+        <td>arginine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 63: / Line 65: @@
          <td>ilvI ilvH ilvN ilvB ilvG_1 ilvG_2 ilvM </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvI,ilvH,ilvN,ilvB,ilvG_1,ilvG_2,ilvM" target="_blank">Map</a></td>
+        <td>valine biosynthetic process, cellular amino acid biosynthetic process</td>
        </tr>
        <tr>
@@ Line 69: / Line 72: @@
          <td>argD </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=argD" target="_blank">Map</a></td>
+        <td>arginine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 75: / Line 79: @@
          <td>cysC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=cysC" target="_blank">Map</a></td>
+        <td>phosphorylation</td>
        </tr>
        <tr>
@@ Line 81: / Line 86: @@
          <td>purB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=purB" target="_blank">Map</a></td>
+        <td>purine nucleotide biosynthetic process</td>
        </tr>
        <tr>
@@ Line 87: / Line 93: @@
          <td>purB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=purB" target="_blank">Map</a></td>
+        <td>purine nucleotide biosynthetic process</td>
        </tr>
        <tr>
@@ Line 93: / Line 100: @@
          <td>purA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=purA" target="_blank">Map</a></td>
+        <td>purine nucleotide biosynthetic process</td>
        </tr>
        <tr>
@@ Line 99: / Line 107: @@
          <td>argC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=argC" target="_blank">Map</a></td>
+        <td>arginine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 105: / Line 114: @@
          <td>ddlB ddlA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ddlB,ddlA" target="_blank">Map</a></td>
+        <td>peptidoglycan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 111: / Line 121: @@
          <td>trpD </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=trpD" target="_blank">Map</a></td>
+        <td>tryptophan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 117: / Line 128: @@
          <td>trpD trpE </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=trpD,trpE" target="_blank">Map</a></td>
+        <td>tryptophan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 123: / Line 135: @@
          <td>asd </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=asd" target="_blank">Map</a></td>
+        <td>homoserine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 129: / Line 142: @@
          <td>pyrI pyrB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=pyrI,pyrB" target="_blank">Map</a></td>
+        <td>pyrimidine nucleotide biosynthetic process</td>
        </tr>
        <tr>
@@ Line 135: / Line 149: @@
          <td>thrA metL lysC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=thrA,metL,lysC" target="_blank">Map</a></td>
+        <td>homoserine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 141: / Line 156: @@
          <td>aspC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=aspC" target="_blank">Map</a></td>
+        <td>L-phenylalanine biosynthetic process from chorismate via phenylpyruvate</td>
        </tr>
        <tr>
@@ Line 147: / Line 163: @@
          <td>hisG </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=hisG" target="_blank">Map</a></td>
+        <td>histidine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 153: / Line 170: @@
          <td>fabZ fabA fabG fabF fabI fabB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=fabZ,fabA,fabG,fabF,fabI,fabB" target="_blank">Map</a></td>
+        <td>fatty acid biosynthetic process, phosphatidic acid biosynthetic process, lipid biosynthetic process</td>
        </tr>
        <tr>
@@ Line 159: / Line 177: @@
          <td>pheA tyrA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=pheA,tyrA" target="_blank">Map</a></td>
+        <td>L-phenylalanine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 165: / Line 184: @@
          <td>aroC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=aroC" target="_blank">Map</a></td>
+        <td>chorismate biosynthetic process</td>
        </tr>
        <tr>
@@ Line 171: / Line 191: @@
          <td>cysK cysM </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=cysK,cysM" target="_blank">Map</a></td>
+        <td>cysteine biosynthetic process from serine</td>
        </tr>
        <tr>
@@ Line 177: / Line 198: @@
          <td>malY metC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=malY,metC" target="_blank">Map</a></td>
+        <td>transcription, DNA-dependent, methionine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 183: / Line 205: @@
          <td>lysA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=lysA" target="_blank">Map</a></td>
+        <td>cellular amino acid biosynthetic process</td>
        </tr>
        <tr>
@@ Line 189: / Line 212: @@
          <td>dapF </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=dapF" target="_blank">Map</a></td>
+        <td>cellular amino acid biosynthetic process</td>
        </tr>
        <tr>
@@ Line 195: / Line 219: @@
          <td>aroG aroH aroF </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=aroG,aroH,aroF" target="_blank">Map</a></td>
+        <td>L-phenylalanine biosynthetic process, tryptophan biosynthetic process, chorismate biosynthetic process</td>
        </tr>
        <tr>
@@ Line 201: / Line 226: @@
          <td>ilvD </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvD" target="_blank">Map</a></td>
+        <td>valine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 207: / Line 233: @@
          <td>dapB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=dapB" target="_blank">Map</a></td>
+        <td>diaminopimelate biosynthetic process</td>
        </tr>
        <tr>
@@ Line 213: / Line 240: @@
          <td>dapA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=dapA" target="_blank">Map</a></td>
+        <td>diaminopimelate biosynthetic process</td>
        </tr>
        <tr>
@@ Line 219: / Line 247: @@
          <td>folA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=folA" target="_blank">Map</a></td>
+        <td>10-formyltetrahydrofolate biosynthetic process</td>
        </tr>
        <tr>
@@ Line 225: / Line 254: @@
          <td>pyrC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=pyrC" target="_blank">Map</a></td>
+        <td>pyrimidine nucleotide biosynthetic process</td>
        </tr>
        <tr>
@@ Line 231: / Line 261: @@
          <td>aroD </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=aroD" target="_blank">Map</a></td>
+        <td>chorismate biosynthetic process</td>
        </tr>
        <tr>
@@ Line 237: / Line 268: @@
          <td>aroB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=aroB" target="_blank">Map</a></td>
+        <td>chorismate biosynthetic process</td>
        </tr>
        <tr>
@@ Line 243: / Line 275: @@
          <td>glmU </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=glmU" target="_blank">Map</a></td>
+        <td>UDP-N-acetylglucosamine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 249: / Line 282: @@
          <td>glmS </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=glmS" target="_blank">Map</a></td>
+        <td>UDP-N-acetylglucosamine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 255: / Line 289: @@
          <td>gmk </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=gmk" target="_blank">Map</a></td>
+        <td>nucleobase-containing small molecule interconversion</td>
        </tr>
        <tr>
@@ Line 261: / Line 296: @@
          <td>puuA glnA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=puuA,glnA" target="_blank">Map</a></td>
+        <td>putrescine catabolic process, ammonia assimilation cycle</td>
        </tr>
        <tr>
@@ Line 267: / Line 303: @@
          <td>purF </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=purF" target="_blank">Map</a></td>
+        <td>purine nucleotide biosynthetic process</td>
        </tr>
        <tr>
@@ Line 273: / Line 310: @@
          <td>murI </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=murI" target="_blank">Map</a></td>
+        <td>peptidoglycan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 279: / Line 317: @@
          <td>guaA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=guaA" target="_blank">Map</a></td>
+        <td>GMP biosynthetic process</td>
        </tr>
        <tr>
          <td>Rv3273 Rv3588c </td>
          <td>Browse in <a href="http://biocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=355&lat=29779&orgid=MTBRV&gnids=Rv3273,Rv3588c" target="_blank">Map</a></td>
-         <td>can cynT </td>
+         <td>|can| cynT </td>
-         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=can,cynT" target="_blank">Map</a></td>
+         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=|can|,cynT" target="_blank">Map</a></td>
+        <td>cyanate catabolic process</td>
        </tr>
        <tr>
@@ Line 291: / Line 331: @@
          <td>hisD </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=hisD" target="_blank">Map</a></td>
+        <td>histidine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 297: / Line 338: @@
          <td>hisC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=hisC" target="_blank">Map</a></td>
+        <td>histidine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 303: / Line 345: @@
          <td>hisH hisF </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=hisH,hisF" target="_blank">Map</a></td>
+        <td>histidine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 309: / Line 352: @@
          <td>hisB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=hisB" target="_blank">Map</a></td>
+        <td>histidine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 315: / Line 359: @@
          <td>trpC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=trpC" target="_blank">Map</a></td>
+        <td>tryptophan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 321: / Line 366: @@
          <td>ilvE </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvE" target="_blank">Map</a></td>
+        <td>valine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 327: / Line 373: @@
          <td>purH </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=purH" target="_blank">Map</a></td>
+        <td>nucleobase-containing small molecule interconversion</td>
        </tr>
        <tr>
@@ Line 333: / Line 380: @@
          <td>guaB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=guaB" target="_blank">Map</a></td>
+        <td>nucleobase-containing small molecule interconversion</td>
        </tr>
        <tr>
@@ Line 339: / Line 387: @@
          <td>leuB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=leuB" target="_blank">Map</a></td>
+        <td>leucine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 345: / Line 394: @@
          <td>leuD leuC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=leuD,leuC" target="_blank">Map</a></td>
+        <td>leucine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 351: / Line 401: @@
          <td>leuD leuC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=leuD,leuC" target="_blank">Map</a></td>
+        <td>leucine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 357: / Line 408: @@
          <td>leuA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=leuA" target="_blank">Map</a></td>
+        <td>leucine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 363: / Line 415: @@
          <td>ilvC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvC" target="_blank">Map</a></td>
+        <td>valine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 369: / Line 422: @@
          <td>ilvC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvC" target="_blank">Map</a></td>
+        <td>valine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 375: / Line 429: @@
          <td>ilvE tyrB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvE,tyrB" target="_blank">Map</a></td>
+        <td>valine biosynthetic process, leucine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 381: / Line 436: @@
          <td>fabD </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=fabD" target="_blank">Map</a></td>
+        <td>fatty acid biosynthetic process</td>
        </tr>
        <tr>
@@ Line 387: / Line 443: @@
          <td>metK </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=metK" target="_blank">Map</a></td>
+        <td>S-adenosylmethionine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 393: / Line 450: @@
          <td>metE metH </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=metE,metH" target="_blank">Map</a></td>
+        <td>methionine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 399: / Line 457: @@
          <td>ndk </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ndk" target="_blank">Map</a></td>
+        <td>nucleobase-containing small molecule interconversion</td>
        </tr>
        <tr>
@@ Line 405: / Line 464: @@
          <td>ndk </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ndk" target="_blank">Map</a></td>
+        <td>nucleobase-containing small molecule interconversion</td>
        </tr>
        <tr>
@@ Line 411: / Line 471: @@
          <td>argF argI </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=argF,argI" target="_blank">Map</a></td>
+        <td>arginine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 417: / Line 478: @@
          <td>pyrF </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=pyrF" target="_blank">Map</a></td>
+        <td>nucleobase-containing small molecule interconversion</td>
        </tr>
        <tr>
@@ Line 423: / Line 485: @@
          <td>pyrE </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=pyrE" target="_blank">Map</a></td>
+        <td>pyrimidine nucleotide biosynthetic process</td>
        </tr>
        <tr>
@@ Line 429: / Line 492: @@
          <td>mraY </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=mraY" target="_blank">Map</a></td>
+        <td>peptidoglycan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 435: / Line 499: @@
          <td>cysH </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=cysH" target="_blank">Map</a></td>
+        <td>sulfur compound metabolic process</td>
        </tr>
        <tr>
@@ Line 441: / Line 506: @@
          <td>serA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=serA" target="_blank">Map</a></td>
+        <td>L-serine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 447: / Line 513: @@
          <td>pgm yqaB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=pgm,yqaB" target="_blank">Map</a></td>
+        <td>glucose metabolic process, dephosphorylation</td>
        </tr>
        <tr>
@@ Line 453: / Line 520: @@
          <td>ppa </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ppa" target="_blank">Map</a></td>
+        <td>phosphate-containing compound metabolic process</td>
        </tr>
        <tr>
@@ Line 459: / Line 527: @@
          <td>tyrA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=tyrA" target="_blank">Map</a></td>
+        <td>L-phenylalanine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 465: / Line 534: @@
          <td>pheA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=pheA" target="_blank">Map</a></td>
+        <td>L-phenylalanine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 471: / Line 541: @@
          <td>purD </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=purD" target="_blank">Map</a></td>
+        <td>purine nucleotide biosynthetic process</td>
        </tr>
        <tr>
@@ Line 477: / Line 548: @@
          <td>purM </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=purM" target="_blank">Map</a></td>
+        <td>purine nucleotide biosynthetic process</td>
        </tr>
        <tr>
@@ Line 483: / Line 555: @@
          <td>trpC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=trpC" target="_blank">Map</a></td>
+        <td>tryptophan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 489: / Line 562: @@
          <td>hisI </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=hisI" target="_blank">Map</a></td>
+        <td>histidine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 495: / Line 569: @@
          <td>purC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=purC" target="_blank">Map</a></td>
+        <td>purine nucleotide biosynthetic process</td>
        </tr>
        <tr>
@@ Line 501: / Line 576: @@
          <td>hisI </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=hisI" target="_blank">Map</a></td>
+        <td>histidine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 507: / Line 583: @@
          <td>purL </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=purL" target="_blank">Map</a></td>
+        <td>purine nucleotide biosynthetic process</td>
        </tr>
        <tr>
@@ Line 513: / Line 590: @@
          <td>hisA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=hisA" target="_blank">Map</a></td>
+        <td>histidine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 519: / Line 597: @@
          <td>prs </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=prs" target="_blank">Map</a></td>
+        <td>nucleotide biosynthetic process</td>
        </tr>
        <tr>
@@ Line 525: / Line 604: @@
          <td>aroA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=aroA" target="_blank">Map</a></td>
+        <td>chorismate biosynthetic process</td>
        </tr>
        <tr>
@@ Line 531: / Line 611: @@
          <td>serC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=serC" target="_blank">Map</a></td>
+        <td>L-serine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 537: / Line 618: @@
          <td>serB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=serB" target="_blank">Map</a></td>
+        <td>L-serine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 543: / Line 625: @@
          <td>rpiA rpiB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=rpiA,rpiB" target="_blank">Map</a></td>
+        <td>D-ribose metabolic process, D-allose catabolic process</td>
        </tr>
        <tr>
@@ Line 549: / Line 632: @@
          <td>dapE </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=dapE" target="_blank">Map</a></td>
+        <td>cellular amino acid biosynthetic process</td>
        </tr>
        <tr>
@@ Line 555: / Line 639: @@
          <td>cysE </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=cysE" target="_blank">Map</a></td>
+        <td>cysteine biosynthetic process from serine</td>
        </tr>
        <tr>
@@ Line 561: / Line 646: @@
          <td>ydiB aroE </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ydiB,aroE" target="_blank">Map</a></td>
+        <td>chorismate biosynthetic process</td>
        </tr>
        <tr>
@@ Line 567: / Line 653: @@
          <td>aroL aroK </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=aroL,aroK" target="_blank">Map</a></td>
+        <td>chorismate biosynthetic process</td>
        </tr>
        <tr>
@@ Line 573: / Line 660: @@
          <td>metB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=metB" target="_blank">Map</a></td>
+        <td>methionine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 579: / Line 667: @@
          <td>cysZ cysA cysW cysU cysP sbp </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=cysZ,cysA,cysW,cysU,cysP,sbp" target="_blank">Map</a></td>
+        <td>sulfur compound metabolic process, transport</td>
        </tr>
        <tr>
@@ Line 585: / Line 674: @@
          <td>dapD </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=dapD" target="_blank">Map</a></td>
+        <td>lysine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 591: / Line 681: @@
          <td>thyA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=thyA" target="_blank">Map</a></td>
+        <td>10-formyltetrahydrofolate biosynthetic process</td>
        </tr>
        <tr>
@@ Line 597: / Line 688: @@
          <td>trxB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=trxB" target="_blank">Map</a></td>
+        <td>oxidation-reduction process</td>
        </tr>
        <tr>
@@ Line 603: / Line 695: @@
          <td>murE </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=murE" target="_blank">Map</a></td>
+        <td>peptidoglycan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 609: / Line 702: @@
          <td>murA </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=murA" target="_blank">Map</a></td>
+        <td>peptidoglycan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 615: / Line 709: @@
          <td>glmU </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=glmU" target="_blank">Map</a></td>
+        <td>UDP-N-acetylglucosamine biosynthetic process</td>
        </tr>
        <tr>
@@ Line 621: / Line 716: @@
          <td>murG </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=murG" target="_blank">Map</a></td>
+        <td>peptidoglycan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 627: / Line 723: @@
          <td>murD </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=murD" target="_blank">Map</a></td>
+        <td>peptidoglycan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 633: / Line 730: @@
          <td>murC </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=murC" target="_blank">Map</a></td>
+        <td>peptidoglycan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 639: / Line 737: @@
          <td>murB </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=murB" target="_blank">Map</a></td>
+        <td>peptidoglycan biosynthetic process</td>
        </tr>
        <tr>
@@ Line 645: / Line 744: @@
          <td>murF </td>
          <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=murF" target="_blank">Map</a></td>
+        <td>peptidoglycan biosynthetic process</td>
        </tr>
      </table>