Revision as of 15:28, 24 September 2013

Safety

Ethylene pathway selection

When we decided to engineer a biological system able to produce ethylene, we looked at all the existing natural pathways. We firstly checked the plants ethylene producing pathway.

An unwanted byproduct is produced in the last step of ethylene synthesis: hydrogen cyanide, an highly toxic gas that inhibits the cytochrome C oxydase enzyme. At very low concentration (around 300ppm) it can kill a human within 10 minutes. Plants however have a detoxyfication mechanism that gets rid of this hazardous acid. That's why we don't die when we eat a fruit!

This is the exception that proves the rule. Bruno in fact is allergic to almost all fruit and would die in any case!!!

This pathway would have been the easiest choice for us to produce ethylene because it already contains SAM synthetase that could have been exploited even for methyl salycilate production. We decided to go for a more SAFE alternative pathway to produce ethylene:

Pseudomonas Syrigae pv., a plant pathogen bacteria, is able to produce ethylene exploiting only one enzyme. 2-Oxoglutarate Oxygenase/Decarboxylase enzyme takes 2-Oxoglutarate as substrate and transforms it into ethylene + water + carbon-dioxyde (Goto M. Plant and Cell Physiology (2012) 26, 141-150).

A solution to avoid unsafe storage of ethylene cylinders

Ethylene is the simplest unsatured hydrocarbon. Like all hydrocarbons, ethylene is an asphyxiant and combustible. In the ripen facility it is stored in high pressure cylinders that can be very dangerous. Using our system can avoid this problem since a bacteria can not produce ethylene in a concentration high enaugh to be explosive (from 2.7% to 34% vol is needed). In fact with an air volume / culture volume ratio equal to 4, we detected and quantified about 200 ppm of ethylene. Safety form;

Precaution taken in working with this gene

[http://2013.igem.org/wiki/index.php?title=Team:UNITN-Trento/Safety&action=edit Edit this page] | Main Page

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 		<center><img class="path" src="https://static.igem.org/mediawiki/2013/b/bb/Tn-2013-project_ethylene-Plants_path.jpg"/></center>
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-			An unwanted byproduct is produced in the last step of ethylene synthesis: hidrogen cyanide, an highly toxic gas that inhibits the cytochrome C oxydase enzyme. At very low concentration (around 300ppm) <font color="red"><b>it can kill a human</b></font> within 10 minutes.
+			An unwanted byproduct is produced in the last step of ethylene synthesis: hydrogen cyanide, an highly toxic gas that inhibits the cytochrome C oxydase enzyme. At very low concentration (around 300ppm) <font color="red"><b>it can kill a human</b></font> within 10 minutes.
-			 Plants however have a detoxyfication mechanism that gets rid of this hazardous acid.That's why we don't die when we eat a fruit!
+			 Plants however have a detoxyfication mechanism that gets rid of this hazardous acid. That's why we don't die when we eat a fruit!
 		 </p>
 		<img title="This is the exception that proves the rule. Bruno in fact is allergic to almost all fruit and would die in any case!!!" id="brunoide" src="https://static.igem.org/mediawiki/2013/5/5a/Tn-2013-bruno_face_2.jpg" /></center>
 		<p style="display: inline-block;width: 56%;vertical-align: middle;margin-left: 55px;">
-			This pathway would have been the easiest choice for us to produce ethylene because it already contains SAM synthetase that could have been exploited even for methyl salycilate production. Although we went for another pathway for several reasons: first it would have been lethal for us, second we have had to insert the detossification system in the complete circuit, for it is also toxic for the poor bacteria; last but not least we are not sure that the detossification enzyme would have worked. In fact plants enzymes often have glycosilisation pattern that our chassis (<i>e. coli</i> and <i>b. subtilis</i>) can not reproduce. In order to avoid these problems, we quitted this path and focused on a more interesting
+			This pathway would have been the easiest choice for us to produce ethylene because it already contains SAM synthetase that could have been exploited even for methyl salycilate production.
-			one.
+We decided to go for a more SAFE alternative pathway to produce ethylene:
 		</p>
-		<p><i>Pseudomonas Syrigae pv.</i>, a plant pathogen bacteria, is able to produce ethylene explointing only one enzyme. 2-Oxoglutarate Oxygenase/Decarboxylase enzyme takes 2-Oxoglutarate
+		<p><i>Pseudomonas Syrigae pv.</i>, a plant pathogen bacteria, is able to produce ethylene exploiting only one enzyme. 2-Oxoglutarate Oxygenase/Decarboxylase enzyme takes 2-Oxoglutarate
-			as substrate and transforms it into ethylene + water + carbon-dioxyde. Goto M. Plant and Cell Physiology (2012) 26, 141-150.
+			as substrate and transforms it into ethylene + water + carbon-dioxyde (Goto M. Plant and Cell Physiology (2012) 26, 141-150).
 		</p>