Team:Paris Bettencourt/Project/Target/FBA

From 2013.igem.org

(Difference between revisions)
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         <td>ilvI ilvH ilvN ilvB ilvG_1 ilvG_2 ilvM </td>
         <td>ilvI ilvH ilvN ilvB ilvG_1 ilvG_2 ilvM </td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvI,ilvH,ilvN,ilvB,ilvG_1,ilvG_2,ilvM" target="_blank">Map</a></td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvI,ilvH,ilvN,ilvB,ilvG_1,ilvG_2,ilvM" target="_blank">Map</a></td>
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         <td>valine biosynthetic process, cellular amino acid biosynthetic process</td>
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         <td>valine biosynthetic process</td>
       </tr>
       </tr>
       <tr>
       <tr>
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         <td>fabZ fabA fabG fabF fabI fabB </td>
         <td>fabZ fabA fabG fabF fabI fabB </td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=fabZ,fabA,fabG,fabF,fabI,fabB" target="_blank">Map</a></td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=fabZ,fabA,fabG,fabF,fabI,fabB" target="_blank">Map</a></td>
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         <td>fatty acid biosynthetic process, phosphatidic acid biosynthetic process, lipid biosynthetic process</td>
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         <td>fatty acid biosynthetic process</td>
       </tr>
       </tr>
       <tr>
       <tr>
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         <td>malY metC </td>
         <td>malY metC </td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=malY,metC" target="_blank">Map</a></td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=malY,metC" target="_blank">Map</a></td>
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         <td>transcription, DNA-dependent, methionine biosynthetic process</td>
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         <td>transcription, DNA-dependent</td>
       </tr>
       </tr>
       <tr>
       <tr>
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         <td>aroG aroH aroF </td>
         <td>aroG aroH aroF </td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=aroG,aroH,aroF" target="_blank">Map</a></td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=aroG,aroH,aroF" target="_blank">Map</a></td>
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         <td>L-phenylalanine biosynthetic process, tryptophan biosynthetic process, chorismate biosynthetic process</td>
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         <td>L-phenylalanine biosynthetic process</td>
       </tr>
       </tr>
       <tr>
       <tr>
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         <td>puuA glnA </td>
         <td>puuA glnA </td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=puuA,glnA" target="_blank">Map</a></td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=puuA,glnA" target="_blank">Map</a></td>
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         <td>putrescine catabolic process, ammonia assimilation cycle</td>
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         <td>putrescine catabolic process</td>
       </tr>
       </tr>
       <tr>
       <tr>
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         <td>ilvE tyrB </td>
         <td>ilvE tyrB </td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvE,tyrB" target="_blank">Map</a></td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=ilvE,tyrB" target="_blank">Map</a></td>
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         <td>valine biosynthetic process, leucine biosynthetic process</td>
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         <td>valine biosynthetic process</td>
       </tr>
       </tr>
       <tr>
       <tr>
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         <td>pgm yqaB </td>
         <td>pgm yqaB </td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=pgm,yqaB" target="_blank">Map</a></td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=pgm,yqaB" target="_blank">Map</a></td>
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         <td>glucose metabolic process, dephosphorylation</td>
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         <td>glucose metabolic process</td>
       </tr>
       </tr>
       <tr>
       <tr>
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         <td>rpiA rpiB </td>
         <td>rpiA rpiB </td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=rpiA,rpiB" target="_blank">Map</a></td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=rpiA,rpiB" target="_blank">Map</a></td>
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         <td>D-ribose metabolic process, D-allose catabolic process</td>
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         <td>D-ribose metabolic process</td>
       </tr>
       </tr>
       <tr>
       <tr>
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         <td>cysZ cysA cysW cysU cysP sbp </td>
         <td>cysZ cysA cysW cysU cysP sbp </td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=cysZ,cysA,cysW,cysU,cysP,sbp" target="_blank">Map</a></td>
         <td>Browse in <a href="http://www.ecocyc.org/overviewsWeb/celOv.shtml?zoomlevel=0&lon=600&lat=29765&orgid=ECOLI&gnids=cysZ,cysA,cysW,cysU,cysP,sbp" target="_blank">Map</a></td>
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         <td>sulfur compound metabolic process, transport</td>
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         <td>sulfur compound metabolic process</td>
       </tr>
       </tr>
       <tr>
       <tr>

Revision as of 09:35, 28 October 2013

E coli essential genes


Browse E. coli essential genes in EcoCyc here

List of predicted complementary knockouts

M Tuberculosis essential gene(s) BioCyc Link E coli knockout(s) BioCyc Link Cellular Process
accD3 accD5 Rv3281 Browse in Map accA accD accB accC Browse in Map fatty acid biosynthetic process
argB Browse in Map argB Browse in Map arginine biosynthetic process
ilvG ilvN ilvB ilvB2 ilvX Browse in Map ilvI ilvH ilvN ilvB ilvG_1 ilvG_2 ilvM Browse in Map valine biosynthetic process
argD Browse in Map argD Browse in Map arginine biosynthetic process
cysD cysN Browse in Map cysC Browse in Map phosphorylation
purB Browse in Map purB Browse in Map purine nucleotide biosynthetic process
purB Browse in Map purB Browse in Map purine nucleotide biosynthetic process
purA Browse in Map purA Browse in Map purine nucleotide biosynthetic process
argC Browse in Map argC Browse in Map arginine biosynthetic process
ddlA Browse in Map ddlB ddlA Browse in Map peptidoglycan biosynthetic process
trpD Browse in Map trpD Browse in Map tryptophan biosynthetic process
trpE Rv2859c Browse in Map trpD trpE Browse in Map tryptophan biosynthetic process
asd Browse in Map asd Browse in Map homoserine biosynthetic process
pyrB Browse in Map pyrI pyrB Browse in Map pyrimidine nucleotide biosynthetic process
ask Browse in Map thrA metL lysC Browse in Map homoserine biosynthetic process
aspC aspB Browse in Map aspC Browse in Map L-phenylalanine biosynthetic process from chorismate via phenylpyruvate
hisG Browse in Map hisG Browse in Map histidine biosynthetic process
fabG2 inhA fas pks15 Browse in Map fabZ fabA fabG fabF fabI fabB Browse in Map fatty acid biosynthetic process
Rv1885c Browse in Map pheA tyrA Browse in Map L-phenylalanine biosynthetic process
aroF Browse in Map aroC Browse in Map chorismate biosynthetic process
cysM3 cysM cysK Browse in Map cysK cysM Browse in Map cysteine biosynthetic process from serine
metC Browse in Map malY metC Browse in Map transcription, DNA-dependent
lysA Browse in Map lysA Browse in Map cellular amino acid biosynthetic process
dapF Browse in Map dapF Browse in Map cellular amino acid biosynthetic process
aroG Browse in Map aroG aroH aroF Browse in Map L-phenylalanine biosynthetic process
ilvD Browse in Map ilvD Browse in Map valine biosynthetic process
dapB Browse in Map dapB Browse in Map diaminopimelate biosynthetic process
dapA Browse in Map dapA Browse in Map diaminopimelate biosynthetic process
dfrA Browse in Map folA Browse in Map 10-formyltetrahydrofolate biosynthetic process
pyrC Browse in Map pyrC Browse in Map pyrimidine nucleotide biosynthetic process
aroD Browse in Map aroD Browse in Map chorismate biosynthetic process
aroB Browse in Map aroB Browse in Map chorismate biosynthetic process
glmU Browse in Map glmU Browse in Map UDP-N-acetylglucosamine biosynthetic process
glmS Browse in Map glmS Browse in Map UDP-N-acetylglucosamine biosynthetic process
gmk Browse in Map gmk Browse in Map nucleobase-containing small molecule interconversion
glnA3 glnA glnA1 glnA2 glnA4 Browse in Map puuA glnA Browse in Map putrescine catabolic process
purF hisH Browse in Map purF Browse in Map purine nucleotide biosynthetic process
murI Browse in Map murI Browse in Map peptidoglycan biosynthetic process
guaA Browse in Map guaA Browse in Map GMP biosynthetic process
Rv3273 Rv3588c Browse in Map |can| cynT Browse in Map cyanate catabolic process
hisD Browse in Map hisD Browse in Map histidine biosynthetic process
hisC cobC hisC2 Browse in Map hisC Browse in Map histidine biosynthetic process
hisF Browse in Map hisH hisF Browse in Map histidine biosynthetic process
hisB Browse in Map hisB Browse in Map histidine biosynthetic process
trpC Browse in Map trpC Browse in Map tryptophan biosynthetic process
ilvE Browse in Map ilvE Browse in Map valine biosynthetic process
purH Browse in Map purH Browse in Map nucleobase-containing small molecule interconversion
guaB1 guaB3 guaB2 Browse in Map guaB Browse in Map nucleobase-containing small molecule interconversion
leuB Browse in Map leuB Browse in Map leucine biosynthetic process
leuD leuC Browse in Map leuD leuC Browse in Map leucine biosynthetic process
leuD leuC Browse in Map leuD leuC Browse in Map leucine biosynthetic process
leuA Browse in Map leuA Browse in Map leucine biosynthetic process
ilvC Browse in Map ilvC Browse in Map valine biosynthetic process
ilvC Browse in Map ilvC Browse in Map valine biosynthetic process
ilvE Browse in Map ilvE tyrB Browse in Map valine biosynthetic process
fadD37 fabD Browse in Map fabD Browse in Map fatty acid biosynthetic process
metK Browse in Map metK Browse in Map S-adenosylmethionine biosynthetic process
metH Browse in Map metE metH Browse in Map methionine biosynthetic process
ndkA Browse in Map ndk Browse in Map nucleobase-containing small molecule interconversion
ndkA Browse in Map ndk Browse in Map nucleobase-containing small molecule interconversion
argF Browse in Map argF argI Browse in Map arginine biosynthetic process
pyrF Browse in Map pyrF Browse in Map nucleobase-containing small molecule interconversion
umpA Browse in Map pyrE Browse in Map pyrimidine nucleotide biosynthetic process
murX Browse in Map mraY Browse in Map peptidoglycan biosynthetic process
cysH Browse in Map cysH Browse in Map sulfur compound metabolic process
Rv0728c serA Browse in Map serA Browse in Map L-serine biosynthetic process
pgmA Browse in Map pgm yqaB Browse in Map glucose metabolic process
ppa Browse in Map ppa Browse in Map phosphate-containing compound metabolic process
tyrA Browse in Map tyrA Browse in Map L-phenylalanine biosynthetic process
pheA Browse in Map pheA Browse in Map L-phenylalanine biosynthetic process
purD Browse in Map purD Browse in Map purine nucleotide biosynthetic process
purM Browse in Map purM Browse in Map purine nucleotide biosynthetic process
hisA Browse in Map trpC Browse in Map tryptophan biosynthetic process
hisI2 Browse in Map hisI Browse in Map histidine biosynthetic process
purC Browse in Map purC Browse in Map purine nucleotide biosynthetic process
hisI Browse in Map hisI Browse in Map histidine biosynthetic process
purQ purL Browse in Map purL Browse in Map purine nucleotide biosynthetic process
hisA Browse in Map hisA Browse in Map histidine biosynthetic process
prsA Browse in Map prs Browse in Map nucleotide biosynthetic process
aroA Browse in Map aroA Browse in Map chorismate biosynthetic process
serC Browse in Map serC Browse in Map L-serine biosynthetic process
serB serB2 Browse in Map serB Browse in Map L-serine biosynthetic process
rpi Browse in Map rpiA rpiB Browse in Map D-ribose metabolic process
dapE Browse in Map dapE Browse in Map cellular amino acid biosynthetic process
cysE Browse in Map cysE Browse in Map cysteine biosynthetic process from serine
aroE Browse in Map ydiB aroE Browse in Map chorismate biosynthetic process
aroK Browse in Map aroL aroK Browse in Map chorismate biosynthetic process
metZ metB Browse in Map metB Browse in Map methionine biosynthetic process
Rv1739c cysA cysW cysT subI Browse in Map cysZ cysA cysW cysU cysP sbp Browse in Map sulfur compound metabolic process
Rv1201c Browse in Map dapD Browse in Map lysine biosynthetic process
Rv2754c thyA Browse in Map thyA Browse in Map 10-formyltetrahydrofolate biosynthetic process
trxB2 Browse in Map trxB Browse in Map oxidation-reduction process
murE Browse in Map murE Browse in Map peptidoglycan biosynthetic process
murA Browse in Map murA Browse in Map peptidoglycan biosynthetic process
glmU Browse in Map glmU Browse in Map UDP-N-acetylglucosamine biosynthetic process
murG Browse in Map murG Browse in Map peptidoglycan biosynthetic process
murD Browse in Map murD Browse in Map peptidoglycan biosynthetic process
murC Browse in Map murC Browse in Map peptidoglycan biosynthetic process
murB Browse in Map murB Browse in Map peptidoglycan biosynthetic process
murF Browse in Map murF Browse in Map peptidoglycan biosynthetic process
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Centre for Research and Interdisciplinarity (CRI)
Faculty of Medicine Cochin Port-Royal, South wing, 2nd floor
Paris Descartes University
24, rue du Faubourg Saint Jacques
75014 Paris, France
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