Team:USTC CHINA/Notebook/Protocols/Sample analysis

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Sample analysis

Sample analysis 1. Preparation of soluble and insoluble cell extracts from B. subtilis - harvest cells by centrifugation (10 min, 6,000 x g, 4 °C) - wash and resuspend in 50 mM sodium phosphate buffer (pH 7.0) at an OD600 of 10 - disrupt cells by ultrasonication (12 W, 6 x 15 pulses with 15 sec intervals) in 1.5 ml Eppendorf tubes containing 1 ml of cell suspension, supplemented with lysozyme (250 μg/μl, CB-0663-5GAM), on ice 破碎1:超声 - alternatively, cells can be disrupted by beat beating: disrupt three times with glass beads (0.1 mm in diameter) (1 g/ml of cell suspension) in an orbital mixer at 180 V, with the mix kept on ice for 3 min between each disruption 破碎2:玻璃珠机械破碎 - take 100 μl of the preparation as first total protein sample (T1) 得到T1 - remove cell debris by centrifugation at 4,300 x g, 10 min - take 100 μl of the supernatant for the second total protein sample (T2) - spin at 8.200 x g (10 min, 4 °C) to separate into insoluble (I) and soluble (S) protein fractions. - per sample use the amount of protein corresponding to 0.025 of OD600 for separation by SDS-PAGE - analyze samples by immunoblotting with specific antiserum