Team:UC Davis/Database
From 2013.igem.org
Motivation: Empowerment and Openness
The from the iGEM DNA distribution kit and registry, to the eagerness of faculty and universities across the globe, the iGEM competition empowers students to make a raw idea into a tangible, presentable project. This fact is made clear depth by the number and depth of projects in past years.[1]
In addition to empowering iGEM-ers, a uploading data to a standardized characterization database promotes openness. In other biological applications, such as genomic sequencing4, open data is the norm for strong reasons; open data allows communities to validate successes and understand failures, while supporting future researchers downstream. For these reasons, iGEM is founded upon an open community. Open data through the BBCDD is another way for iGEM-ers to contribute to an open community.
Approaches: Past, and the BBCDD
Past approaches to designing a BioBrick characterization database dealt with difficult questions6 of data standardization; for the other part types, we created a flexible data format to accommodate different methods of characterization and data types that teams could possibly use.
totally unpolished: For our new part part RiboTal, we wanted to see how it functions before making data standards for it. Go see how we went about answering some data standards issues here: link.
Visit the BBCDD |
Data StandardsSee the BBCDD's standards, and how examples of creating more. |
Initial PopulationSee how we initially populated the BBCDD. |
References
[1] M Galdzicki, D Chandran, JH Gennari, HM Sauro, "Design and Analysis of Bio-molecular Circuits", pp. 281, 2011
External Links
1 https://2011.igem.org/Jamborees
2 https://2012.igem.org/Jamborees
3 http://www.ncbi.nlm.nih.gov/genbank
4 http://www.pdb.org/pdb/home/home.do
5 http://openwetware.org/wiki/Parts_characterization#Discussion_Topics
6 http://www.jbioleng.org/content/3/1/4