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Team:Paris Saclay/Modeling/Simulator
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='''Simulator'''= | ='''Simulator'''= | ||
| + | == Wiki-integrated simulator == | ||
| + | |||
| + | A simulation graph is worth a thousand words. But an integrated, user-controllable online simulator is worth a million. | ||
| + | |||
| + | === Explanation === | ||
| + | |||
| + | In order to make our models easier to understand, we have created an online simulator fully integrated in the iGEM wiki system. This simulator uses the aforementioned HSIM rules and implements one of the HSIM algorithms that can be summed up as the following series of steps : | ||
| + | # Randomly reorder the reaction list | ||
| + | # Compute the number of reactions to execute : *R*. R is a rational number proportional to the concentrations, the reaction probability, and a constant factor '''α'''. | ||
| + | # Execute the reaction '''integer part of R''' times | ||
| + | # Execute it one more time with the probability '''decimal part of R''' | ||
| + | See the reference article for more details. | ||
| + | |||
| + | This self-contained simulator is written in standard HTML5 and is therefore compatible with the iGEM 2013 rules which forbid the embedding of plug-ins and external data. | ||
| + | |||
| + | === How to control the simulator === | ||
| + | |||
| + | [[File:PsSimulator.png|center|frame|Our wiki simulator]] | ||
| + | |||
| + | === How to include this simulator in your wiki === | ||
{{Team:Paris_Saclay/incl_fin}} | {{Team:Paris_Saclay/incl_fin}} | ||
Revision as of 20:23, 27 September 2013
Contents |
Simulator
Wiki-integrated simulator
A simulation graph is worth a thousand words. But an integrated, user-controllable online simulator is worth a million.
Explanation
In order to make our models easier to understand, we have created an online simulator fully integrated in the iGEM wiki system. This simulator uses the aforementioned HSIM rules and implements one of the HSIM algorithms that can be summed up as the following series of steps :
- Randomly reorder the reaction list
- Compute the number of reactions to execute : *R*. R is a rational number proportional to the concentrations, the reaction probability, and a constant factor α.
- Execute the reaction integer part of R times
- Execute it one more time with the probability decimal part of R
See the reference article for more details.
This self-contained simulator is written in standard HTML5 and is therefore compatible with the iGEM 2013 rules which forbid the embedding of plug-ins and external data.
How to control the simulator
Our wiki simulator
How to include this simulator in your wiki
