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Team:Freiburg/Highlights
From 2013.igem.org
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interaction. | interaction. | ||
</p><p></p><p> | </p><p></p><p> | ||
| - | By fusing <b>effector domains</b> to Cas9 we altered the properties | + | By fusing <b>effector domains</b> to Cas9 we altered the properties in various ways.</p><p> The <b>activation domain VP16</b> is able to activate transcription of |
genes.<p></p> | genes.<p></p> | ||
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<tr> | <tr> | ||
<td> <b>Figure 1: Activation by Cas9:VP16 </b><br> | <td> <b>Figure 1: Activation by Cas9:VP16 </b><br> | ||
| - | By fusing the transcriptional activation domain VP16 to Cas9, we are able to | + | By fusing the transcriptional activation domain VP16 to Cas9, we are able to activate a SEAP reporter transcription. |
</td> | </td> | ||
</tr> | </tr> | ||
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</div> | </div> | ||
| - | The fusion of the <b>transcriptional repressor domain KRAB</b> leads to synthetic | + | The fusion of the <b>transcriptional repressor domain KRAB</b> leads to synthetic repression of gene expression.<p></p> |
<div> | <div> | ||
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Specific <b>chromatin modification</b> was | Specific <b>chromatin modification</b> was | ||
| - | achieved by fusing a histone | + | achieved by fusing a histone methyltransferase G9a to dCas9. With this protein we are able to specifically repress endogenous gene expression. </p> <p> |
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</p> <p> | </p> <p> | ||
| - | In summary, we established a new modularized | + | In summary, we established a new modularized toolkit for modulating gene expression: <b>The uniCAS Toolkit!</b> |
</div> | </div> | ||
Revision as of 15:54, 29 September 2013
- ...to design a catalytically inactive version of Cas9 and designing a new class of DNA binding proteins.
- ...to combine this modified Cas9 with different effectors.
- ...to express the system in various mammalian cell lines.
- ...to control human gene expression via our modified CRISPR/Cas system.
- ...to control gene expression on light stimulus.
A mutated Cas9 derived protein without nickase function was our start. This is basically a DNA binding protein, that is relying on a protein-RNA-DNA interaction.
By fusing effector domains to Cas9 we altered the properties in various ways.
The activation domain VP16 is able to activate transcription of genes.
 |
| Figure 1: Activation by Cas9:VP16 By fusing the transcriptional activation domain VP16 to Cas9, we are able to activate a SEAP reporter transcription. |
 |
| Figure 2: Repression via Cas9:KRAB Using Cas9:KRAB we were able to repress GFP expression in mammalian cells. |
 |
| Figure 3: Endogenous, stable repression by Cas9:G9a Chromatin remodeling, resulting in repression of endogenous genes is possible by fusing the histone methyltransferase G9a to Cas9. |
We were able to induce our system on light stimulus. This was possible by using photorecetors of higher plants.
By building a plasmid containing the necessary RNAs and insertion sites for targeting we created a modular, BioBrick compatible system for multiple DNA targeting: The RNAimer. Using our RNAimer plasmid it is easy to combine several target sequences on one plasmid using the BioBrick standard.
We developed an ELISA based method. With this method we can quantify the binding efficiency of our proteins. We called this binding assay uniBAss. It is a powerful tool for the characterization of the interaction between the modified Cas9 and the locus specific RNA.
 |
| Figure 4: uniBAss We developed an assay for testing the binding capacity of our constructs. |
In summary, we established a new modularized toolkit for modulating gene expression: The uniCAS Toolkit!
