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Team:ETH Zurich/Parameter
From 2013.igem.org
(Difference between revisions)
| Line 14: | Line 14: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td>D<sub> | + | <td>D<sub>OHHL</sub></td> |
<td>4.9 x 10<sup>-6</sup> cm<sup>2</sup>/s</td> | <td>4.9 x 10<sup>-6</sup> cm<sup>2</sup>/s</td> | ||
| - | <td> | + | <td>OHHL diffusion constant</td> |
<td>Stewart P.S., 2003</td> | <td>Stewart P.S., 2003</td> | ||
</tr> | </tr> | ||
| Line 26: | Line 26: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td>α<sub> | + | <td>α<sub>OHHL</sub></td> |
<td>0.01 min<sup>-1</sup></td> | <td>0.01 min<sup>-1</sup></td> | ||
| - | <td> | + | <td>OHHL synthesis rate</td> |
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td>d<sub> | + | <td>d<sub>OHHL</sub></td> |
<td>0.01 min<sup>-1</sup></td> | <td>0.01 min<sup>-1</sup></td> | ||
| - | <td> | + | <td>OHHL degradation rate (intracellular)</td> |
<td>Basu <i>et al.</i>, 2005</td> | <td>Basu <i>et al.</i>, 2005</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td>d<sub> | + | <td>d<sub>OHHL,e</sub></td> |
<td>4.8135 x 10<sup>-4</sup>min<sup>-1</sup></td> | <td>4.8135 x 10<sup>-4</sup>min<sup>-1</sup></td> | ||
| - | <td> | + | <td>OHHL extracellular decay</td> |
| - | <td> | + | <td>Horswill <i>et al.</i>, 2007</td> |
| + | </tr> | ||
| + | <tr> | ||
| + | <td>α<sub>LuxI</sub></td> | ||
| + | <td>1 μ M/min</td> | ||
| + | <td>LuxI synthesis rate</td> | ||
| + | <td> </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
Revision as of 00:18, 1 October 2013
Parameters
Overview of the parameters used in the models.
| Parameter | Value | Description | Reference |
|---|---|---|---|
| DOHHL | 4.9 x 10-6 cm2/s | OHHL diffusion constant | Stewart P.S., 2003 |
| Cagar | 0.9 | Reduced diffusion coefficient | Fatin-Rouge et al., 2004 |
| αOHHL | 0.01 min-1 | OHHL synthesis rate | |
| dOHHL | 0.01 min-1 | OHHL degradation rate (intracellular) | Basu et al., 2005 |
| dOHHL,e | 4.8135 x 10-4min-1 | OHHL extracellular decay | Horswill et al., 2007 |
| αLuxI | 1 μ M/min | LuxI synthesis rate | |
| ρR | 0.5 μM-3min-1 | LuxR/AHL dimerization | Basu et al., 2005 |
| KR | 0.01 μM | LuxR/AHL activation coefficient | Basu et al., 2005 |
| η | 1 | Hill coefficient | Basu et al., 2005 |
| αGFP | 2 μM min-1 | GFP synthesis rate | Basu et al., 2005 |
| dGFP | 0.0692 min-1 | GFP degradation rate | Basu et al., 2005 |
| αGusA | GusA synthesis rate | ||
| dGusA | 4.01127 x 10-6 s-1 | GusA decay (half-life 55oC 2 days) | Jefferson, 1995 |
| KGusA | 4.45 nM | LuxR/AHL activation coefficient | estimated |
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