Team:ETH Zurich/References

From 2013.igem.org

(Difference between revisions)
Line 4: Line 4:
<b>Quorum sensing</b>
<b>Quorum sensing</b>
 +
<html><a id="Antunes2007" class="frog"></a></html>
<p> Antunes L.C., Ferreira R.B., Lostroh C.P., Greenberg E.P.; <i>Journal of bacteriology</i> 2008 July; 190(13): 4392–4397.<br>
<p> Antunes L.C., Ferreira R.B., Lostroh C.P., Greenberg E.P.; <i>Journal of bacteriology</i> 2008 July; 190(13): 4392–4397.<br>
-
<i>A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites.</i>
+
<i>A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites</i>
-
[http://www.ncbi.nlm.nih.gov/pubmed/18083819 PubMed]</p>
+
[http://www.ncbi.nlm.nih.gov/pubmed/18083819 PMC]</p>
<html><a id="Basu2005" class="frog"></a></html>
<html><a id="Basu2005" class="frog"></a></html>
Line 87: Line 88:
<i>Size Effects on Diffusion Processes within Agarose Gels</i>
<i>Size Effects on Diffusion Processes within Agarose Gels</i>
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304142/ PMC]</p>
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304142/ PMC]</p>
-
 
-
 
-
<html><a id="Antunes2007" class="frog"></a></html>
 
-
<p>Luis Caetano M. Antunes, Rosana B. R. Ferreira, C. Phoebe Lostroh, and E. Peter Greenberg; <i>Journal of Bacteriology</i>. 2008 July; 190; 13:4392–4397.<br>
 
-
<i>A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites</i>
 
-
[http://www.ncbi.nlm.nih.gov/pubmed/18083819 PMC]</p>
 
<br clear="all"/>
<br clear="all"/>
{{:Team:ETH_Zurich/templates/footer}}
{{:Team:ETH_Zurich/templates/footer}}

Revision as of 16:31, 26 October 2013

Header2.png
80px-Eth igem logo.png

References

Quorum sensing

Antunes L.C., Ferreira R.B., Lostroh C.P., Greenberg E.P.; Journal of bacteriology 2008 July; 190(13): 4392–4397.
A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites [http://www.ncbi.nlm.nih.gov/pubmed/18083819 PMC]

Basu S., Gerchman Y., Collins C.H., Arnold F.H., Weiss R.; Nature; 2005 Apr; 434: 1130-1134.
A synthetic multicellular system for programmed pattern formation. [http://www.nature.com/nature/journal/v434/n7037/abs/nature03461.html Nature]

Garcia-Ojalvo J., Elowitz M.B., Strogatz S.H.; PNAS; 2004 Jul; 101(30): 10955–10960.
Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing. [http://www.pnas.org/content/101/30/10955.long PNAS]

Geske G.D., Mattmann M.E., Blackwell H.E.; Bioorganic & Medicinal Chemistry Letters; 2008 Nov; 18(12): 5978–5981.
Evaluation of a focused library of N-aryl L-homoserine lactones reveals a new set of potent quorum sensing modulators. [http://www.ncbi.nlm.nih.gov/pubmed/18760602 PubMed]

Horswill A.R., Stoodley P., Stewart P.S., Parsek M.R.; Anal Bioanal Chem.; 2007 Jan; 387(2): 371–380.
The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797063/ PMC]

Daniel R., Rubens J.R., Sarpeshkar R., Lu TK.; Nature; 2013 May; 497: 619–623.
Synthetic analog computation in living cells. [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature12148.html Nature]

Ravn L, Christensen AB, Molin S, Givskov M, Gram L. J Microbiol Methods; 2001 Apr;44(3):239-51
Methods for detecting acylated homoserine lactones produced by Gram-negative bacteria and their application in studies of AHL-production kinetics. [http://www.ncbi.nlm.nih.gov/pubmed/11240047 PubMed]

Schaefer A.L., Val D.L., Hanzelka B.L. , Cronan, Jr J.E., Greenberg E.P.; Proc Natl Acad Sci. ; 1996 Sept; 93(18): 9505–9509.
Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC38458/ PMC]

Stewart P.S.; Journal of Bacteriology; 2003 Mar.; 185(5): 1485-1491.
Diffusion in Biofilms. [http://jb.asm.org/content/185/5/1485.full JB]

You L., Cox R.S., Weiss R., Arnold F.H.; Nature 428, 868-871
Programmed population control by cell–cell communication and regulated killing [http://www.ncbi.nlm.nih.gov/pubmed/15064770 PubMed]

Zhang H.B., Wang L.H., Zhang L.H.;Curr Protoc Microbiol. 2007 Jun;
Detection and Analysis of Quorum-Quenching Enzymes Against Acyl Homoserine Lactone Quorum-Sensing Signals. [http://onlinelibrary.wiley.com/doi/10.1002/9780471729259.mc01c03s05/full Wiley Online library]


Hydrolases

Choi JH, Jeong KJ, Kim SC, Lee SY; Appl Microbiol Biotechnol. 2000 Jun; 53(6): 640-5. Efficient secretory production of alkaline phosphatase by high cell density culture of recombinant Escherichia coli using the Bacillus sp. endoxylanase signal sequence.[http://www.ncbi.nlm.nih.gov/pubmed/10919319 PubMed]

Farias T, Mandrich L, Rossi M, Manco G; Protein Pept Lett. 2007; 14(2):165-9. Biochemical and thermostability features of acetyl esterase Aes from Escherichia coli. [http://www.ncbi.nlm.nih.gov/pubmed/17305603 PubMed]

Jefferson RA; US 5432081 A. 1995 Jul. Host cells transformed with the E. coli glucoronide permease gene

Jokerst J.C., Adkins J.A., Bisha B., Mentele M.M., Goodridge L. D., Henry C. S.; Chem.; 2012, 84:2900−2907
Development of a Paper-Based Analytical Device for Colorimetric Detection of Select Foodborne Pathogens [http://pubs.acs.org/doi/pdf/10.1021/ac203466y pubs.acs]

Joly N., Danot O., Schlegel A., Boos W., Richet E.; J Biol Chem. 2002 May; 277(19):16606-13.
The Aes protein directly controls the activity of MalT, the central transcriptional activator of the Escherichia coli maltose regulon. [http://www.ncbi.nlm.nih.gov/pubmed/11867639 PubMed]

Kanaya S., Koyanagi T., Kanaya E.; Biochem. J. 1998; 332:75-80.
An esterase from Escherichia coli with a sequence similarity to hormone-sensitive lipase. [http://www.ncbi.nlm.nih.gov/pubmed/9576853 PubMed]

Kiernan JA; Biotech Histochem. 2007 Apr; 82(2):73-103. Indigogenic substrates for detection and localization of enzymes. [http://www.ncbi.nlm.nih.gov/pubmed/17577701 PubMed]


Others

Corish P, Tyler-Smith C; Protein Engineering. 199; 12(12): 1053-1040.
Attenuation of green fluorescent protein half-life in mammalian cells. [http://peds.oxfordjournals.org/content/12/12/1035.full peds]

Fatin-Rouge N., Starchev K., Buffle J.; Biophysical Journal. 2004 May; 86:2710–2719.
Size Effects on Diffusion Processes within Agarose Gels [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304142/ PMC]