Team:Evry/data analysis
From 2013.igem.org
Analysis of plate reader Data
Presentation
As the team was confronted to huge amount of data to analyze, we decided to create a software to help us in this taks. This software is called sana for Serie ANAlysis and is freely available on here on github.Technical Description
The software is written in Python2.x(with a possible compatility with Python3 in the future). It uses the numpy and matplotlib libraries to respectively handle the series and display them.Architecture
Basically, sana reads a csv file and a configuration file as inputs :- The CSV file contain the DATA to treat
- The configuration file contains how to interpret the data and what to do with them
- Name and locate data series in the CSV file;
- Create "views" (in the way of databases) to manipulate series more easily (intersection of column and row of a plate reader experiment for example
- Perform computations on these series : mean, addition, substraction, division (with the corresponding variances automaticaly computed).
- Output eith plots 2D or 3D or the data in a CSV format
And More...
If you are interested in the project you can checkout its github page and send comments.