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Team:INSA Toulouse/contenu/project/references
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<h1 class="title1">References</h1> | <h1 class="title1">References</h1> | ||
| + | |||
| + | <h3 class="title3">Logic gates</h3> | ||
<div class="list2"> | <div class="list2"> | ||
<ul class="arrow"> | <ul class="arrow"> | ||
| - | + | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/23539178" target="_blank">Bonnet, J.Y., 2013. Amplifying Genetic Logic Gates. Science 340, 599–603.</a></li> | |
| - | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/23539178">Bonnet | + | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/23396014" target="_blank">Siuti, P., Yazbek, J., Lu, T.K., 2013. Synthetic circuits integrating logic and memory in living cells. Nature Biotechnology 31, 448–452.</a></li> |
| - | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/23396014">Siuti | + | <li><a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3237015/" target="_blank">Bor-Sen Chen, Chih-Yuan Hsu, Jing-Jia Liou, 2011. Robust Design of Biological Circuits: Evolutionary Systems Biology Approach. Journal of Biomedicine & Biotechnology 1–14.</a></li> |
| - | <li><a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3237015/">Chen | + | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/23526588" target="_blank">Miyamoto, T., Razavi, S., DeRose, R., Inoue, T., 2013. Synthesizing biomolecule-based Boolean logic gates. ACS Synthetic Biology 2, 72–82.</a></li> |
| - | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/23526588">Miyamoto | + | </ul> |
| - | < | + | </div> |
| - | < | + | |
| - | Sensors | + | <div class="clear"></div> |
| - | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/19109976"> | + | |
| - | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/16306980">Levskaya A. | + | <h3 class="title3">Sensors</h3> |
| + | |||
| + | <div class="list2"> | ||
| + | |||
| + | <ul class="arrow"> | ||
| + | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/19109976" target="_blank"> Möglich, A., Ayers, R.A., Moffat, K., 2009. Design and signaling mechanism of light-regulated histidine kinases. J. Mol. Biol. 385, 1433–1444.</a></li> | ||
| + | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/16306980" target="_blank">Levskaya, A., Chevalier, A.A., Tabor, J.J., Simpson, Z.B., Lavery, L.A., Levy, M., Davidson, E.A., Scouras, A., Ellington, A.D., Marcotte, E.M., Voigt, C.A., 2005. Synthetic biology: engineering Escherichia coli to see light. Nature 438, 441–442.</a></li> | ||
| + | </ul> | ||
| + | </div> | ||
| + | |||
| + | <div class="clear"></div> | ||
| + | |||
| + | <h3 class="title3">In vitro recombinase characterization protocol</h3> | ||
| + | |||
| + | <div class="list2"> | ||
| + | |||
| + | <ul class="arrow"> | ||
| + | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/14617171" target="_blank">Kim, A.I., Ghosh, P., Aaron, M.A., Bibb, L.A., Jain, S., Hatfull, G.F., 2003. Mycobacteriophage Bxb1 integrates into the Mycobacterium smegmatis groEL1 gene. Mol. Microbiol. 50, 463–473.</a></li> | ||
| + | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/12057961" target="_blank">Stoll, S.M., Ginsburg, D.S., Calos, M.P., 2002. Phage TP901-1 site-specific integrase functions in human cells. J. Bacteriol. 184, 3657–3663.</a></li> | ||
| + | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/9576912" target="_blank">Thorpe, H.M., Smith, M.C., 1998. In vitro site-specific integration of bacteriophage DNA catalyzed by a recombinase of the resolvase/invertase family. Proc. Natl. Acad. Sci. U.S.A. 95, 5505–5510.</a></li> | ||
| + | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/20298189" target="_blank">Smith, M.C.M., Brown, W.R.A., McEwan, A.R., Rowley, P.A., 2010. Site-specific recombination by phiC31 integrase and other large serine recombinases. Biochem. Soc. Trans. 38, 388–394.</a></li> | ||
| + | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/10594822" target="_blank">Smith, S.G., Dorman, C.J., 1999. Functional analysis of the FimE integrase of Escherichia coli K-12: isolation of mutant derivatives with altered DNA inversion preferences. Mol. Microbiol. 34, 965–979.</a></li> | ||
| + | </ul> | ||
| + | </div> | ||
| + | |||
| + | <div class="clear"></div> | ||
| + | |||
| + | <h3 class="title3">Modelling</h3> | ||
| + | <div class="list2"> | ||
| + | |||
| + | <ul class="arrow"> | ||
| + | |||
| + | <li><a href="http://www.ncbi.nlm.nih.gov/pubmed/17233715" target="_blank">Steindler, L., Venturi, V., 2007. Detection of quorum-sensing N-acyl homoserine lactone signal molecules by bacterial biosensors. FEMS Microbiol. Lett. 266, 1–9.</a></li> | ||
| + | <li><a href="http://www.sciencedirect.com/science/article/pii/S0079670099000167" target="_blank">Masaro, L., Zhu, X.., 1999. Physical models of diffusion for polymer solutions, gels and solids. Progress in Polymer Science 24, 731–775.<a href="" target="_blank"></a></li> | ||
| + | |||
</ul> | </ul> | ||
Latest revision as of 20:27, 4 October 2013
References
Logic gates
- Bonnet, J.Y., 2013. Amplifying Genetic Logic Gates. Science 340, 599–603.
- Siuti, P., Yazbek, J., Lu, T.K., 2013. Synthetic circuits integrating logic and memory in living cells. Nature Biotechnology 31, 448–452.
- Bor-Sen Chen, Chih-Yuan Hsu, Jing-Jia Liou, 2011. Robust Design of Biological Circuits: Evolutionary Systems Biology Approach. Journal of Biomedicine & Biotechnology 1–14.
- Miyamoto, T., Razavi, S., DeRose, R., Inoue, T., 2013. Synthesizing biomolecule-based Boolean logic gates. ACS Synthetic Biology 2, 72–82.
Sensors
- Möglich, A., Ayers, R.A., Moffat, K., 2009. Design and signaling mechanism of light-regulated histidine kinases. J. Mol. Biol. 385, 1433–1444.
- Levskaya, A., Chevalier, A.A., Tabor, J.J., Simpson, Z.B., Lavery, L.A., Levy, M., Davidson, E.A., Scouras, A., Ellington, A.D., Marcotte, E.M., Voigt, C.A., 2005. Synthetic biology: engineering Escherichia coli to see light. Nature 438, 441–442.
In vitro recombinase characterization protocol
- Kim, A.I., Ghosh, P., Aaron, M.A., Bibb, L.A., Jain, S., Hatfull, G.F., 2003. Mycobacteriophage Bxb1 integrates into the Mycobacterium smegmatis groEL1 gene. Mol. Microbiol. 50, 463–473.
- Stoll, S.M., Ginsburg, D.S., Calos, M.P., 2002. Phage TP901-1 site-specific integrase functions in human cells. J. Bacteriol. 184, 3657–3663.
- Thorpe, H.M., Smith, M.C., 1998. In vitro site-specific integration of bacteriophage DNA catalyzed by a recombinase of the resolvase/invertase family. Proc. Natl. Acad. Sci. U.S.A. 95, 5505–5510.
- Smith, M.C.M., Brown, W.R.A., McEwan, A.R., Rowley, P.A., 2010. Site-specific recombination by phiC31 integrase and other large serine recombinases. Biochem. Soc. Trans. 38, 388–394.
- Smith, S.G., Dorman, C.J., 1999. Functional analysis of the FimE integrase of Escherichia coli K-12: isolation of mutant derivatives with altered DNA inversion preferences. Mol. Microbiol. 34, 965–979.
Modelling
