Team:INSA Toulouse/contenu/safety/safety in the lab

From 2013.igem.org

(Difference between revisions)
Line 92: Line 92:
   <h2 class="title2">Concerning our institution, safety in INSA Toulouse</h2>
   <h2 class="title2">Concerning our institution, safety in INSA Toulouse</h2>
-
   <p class="texte">INSA Toulouse is a public school, which have some laboratories used for public research. Everybody in the INSA must also follow the French work code, which legislates for respect of environment, workers and public safety. Most of the rules we have to follow are presented on the manual “<a href="http://www.who.int/csr/resources/publications/biosafety/LabBiosMan3rdFrenchweb.pdf">Manuel de sécurité en laboratoires</a>” (from the WHO), which permit us to know almost everything we have to know about safety with microorganisms we use and products we manipulate. In addition, daily use of Deming wheel allows us to improve the safety system and keep it updated.</p>
+
   <p class="texte">INSA Toulouse is a public school, which have some laboratories used for public research. Everybody in the INSA must also follow the French work code, which legislates for respect of environment, workers and public safety. Most of the rules we have to follow are presented in the manual “<a href="http://www.who.int/csr/resources/publications/biosafety/LabBiosMan3rdFrenchweb.pdf">Manuel de sécurité en laboratoires</a>” (from the WHO), which permits us to know almost everything we have to know about safety with microorganisms we use and products we manipulate. In addition, daily use of Deming wheel allows us to improve the safety system and keep it updated..</p>
    
    
   <h2 class="title2">Concerning the laboratory</h2>
   <h2 class="title2">Concerning the laboratory</h2>
   <p class="texteleft530">  <span class="title3">Worker protections</span>
   <p class="texteleft530">  <span class="title3">Worker protections</span>
-
<br>As in every lab, we use conventional protection when manipulating. Every experiment has to be made with gloves and a conventional lab coat , protecting the worker and avoiding contaminations. We also wear glasses when they are useful (UV exposition, EtBr using, hot water manipulations, chemicals manipulation…).</p>
+
<br>As in every lab, we use conventional protection when manipulating. Every experiment has to be made with gloves and a conventional lab coat, which aimed at protecting the worker and avoiding contaminations. We also wear glasses when they are useful (UV exposition, EtBr using, hot water manipulations, chemicals manipulation…).</p>
  <img src="https://static.igem.org/mediawiki/2013/2/2b/Hang.png" class="imgcontentright" />
  <img src="https://static.igem.org/mediawiki/2013/2/2b/Hang.png" class="imgcontentright" />
Line 105: Line 105:
    
    
<h3 class="title3">Waste gesture</h3>
<h3 class="title3">Waste gesture</h3>
-
   <p class="texteleft480">After a formation of chemical waste gesture and biological hazard, we learn how to use different trash cabs as described in the picture.  
+
   <p class="texteleft480">After a formation for chemical waste gesture and biological hazard, we learn how to use different trash cabs as described in the picture. Biological wastes, potentially containing viable microorganism, are autoclaved in a special bag, then discarded by the classical way. Chemical wastes are regrouped and treated every month together with wastes of other labs of the campus.</p>
-
Biological wastes, potentially containing viable microorganism, are firstable autoclaved in a special bag, then discard on the classical way.
+
-
Chemical waste are regrouped and treated every month together with wastes of other labs of the campus.</p>
+
Line 126: Line 124:
     <ul class="circlearrow">
     <ul class="circlearrow">
       <li> <span class="title3">Chemical Storage</span></br>
       <li> <span class="title3">Chemical Storage</span></br>
-
<span  class="texte">We got separated and dedicated racks for every kind of chemical product we use. As you can see on pictures, those boxes are key-closed and gesture of bottles and product is made when we used them.</span></li>
+
<span  class="texte">We got separated and dedicated racks for every kind of chemical product we use. As you can see on these pictures, those boxes are key-closed.</span></li>
</ul>
</ul>
   </div>
   </div>
Line 139: Line 137:
     <ul class="circlearrow">
     <ul class="circlearrow">
       <li> <span class="title3">Ethydium bromure room</span></br>
       <li> <span class="title3">Ethydium bromure room</span></br>
-
<span class="texte">A room is dedicated for using EtBr, while this reactant has been proved as highly mutagenic and dangerous for user. This room is key-closed and gloves, glasses and lab coat are compulsory to enter in. Two special boxes, for gesture of spoiled EtBr wastes, are putting at disposition of users for future and special treatments.</span></li>
+
<span class="texte">A room is dedicated for using EtBr asthis reactant has been proved to be highly mutagenic and dangerous for user. This room is key-closed. One must wear gloves, glasses and lab coat to enter in. Two special boxes are available to discardspoiled EtBr.</span></li>
<img src="https://static.igem.org/mediawiki/2013/9/90/EtBr_wastes_-_400_px.png" class="imgcontentleftmarge" />
<img src="https://static.igem.org/mediawiki/2013/9/90/EtBr_wastes_-_400_px.png" class="imgcontentleftmarge" />
</ul>
</ul>
Line 156: Line 154:
     <ul class="circlearrow">
     <ul class="circlearrow">
       <li> <span class="title3">Biological safety cabinet</span></br>
       <li> <span class="title3">Biological safety cabinet</span></br>
-
<span class="texte">To avoid external contamination and limiting exposure to biological material, we use a Biological safety cabinet (FASTER – Ultrasafe) which is controlled every year. It works according to the principle of laminar flux circulation and filter, in such a way microorganism are stuck into the cabinet, and external contaminations are impossible. This cabinet is cleaned-up every morning when we arrive and every evening when we leave.</span></li>
+
<span class="texte">To avoid external contamination and limit exposure to biological material, we use a Biological safety cabinet (FASTER – Ultrasafe) which is controlled every year. It works according to the principle of laminar flux circulation and filter, in such a way microorganisms are stuck into the cabinet, and external contaminations are impossible. This cabinet is cleaned-up every morning when we arrive and every evening when we leave.</span></li>
</ul>
</ul>
Line 173: Line 171:
     <ul class="circlearrow">
     <ul class="circlearrow">
       <li> <span class="title3">Electric burner</span></br>
       <li> <span class="title3">Electric burner</span></br>
-
<span class="texte">For all manipulations, we also use electric burners, which are as efficient as Bunsen burners (even more), but much more safe than them (this way we limit fire hazards)</span></li>
+
<span class="texte">For all manipulations, we also use electric burners, which are as efficient as Bunsen burners (even more), but much more safe than them (this way we limit fire hazards).</span></li>
</ul>
</ul>
Line 213: Line 211:
     <ul class="circlearrow">
     <ul class="circlearrow">
       <li> <span class="title3">P2 Laboratory</span></br>
       <li> <span class="title3">P2 Laboratory</span></br>
-
<span class="texte">Special care have been taken to manipulate the <i>Chromobacterium violaceum</i> strain which is classified as a class 2 microorganism.</span></li>
+
<span class="texte">Special care have been taken to manipulate the Chromobacterium violaceum strain which is classified as a class 2 microorganism.</span></li>
     </ul>
     </ul>
Line 232: Line 230:
     <ul class="circlearrow">
     <ul class="circlearrow">
       <li> <span class="title3">Researcher safety?</span></br>
       <li> <span class="title3">Researcher safety?</span></br>
-
<span  class="texte">In this project, we are working with biosafety level 1 microorganism (according to World Health Organization (WHO) <a href="http://www.who.int/csr/resources/publications/biosafety/Biosafety7.pdf"> Laboratory Biosafety Manual</a>) with Escherichia coli DH5α and DH5-1 strains, which are considered as biologically safe for users. Some of chemical compounds used could be dangerous for health (EtBr, Phenolchloroform..), but as previously described, all precautions are taken to ensure security and safety for all users.</span></li>
+
<span  class="texte">In this project, we are working with biosafety level 1 microorganism (according to World Health Organization (WHO) <a href="http://www.who.int/csr/resources/publications/biosafety/Biosafety7.pdf"> (Laboratory Biosafety Manual</a>) with Escherichia coli DH5α and DH5-1 strains, which are considered as biologically safe for users. Some of chemical compounds used could be dangerous for health (EtBr, Phenolchloroform…), but as previously described, all precautions are taken to ensure security and safety for all users.</span></li>
<br>
<br>
       <li> <span class="title3">Public safety?</span></br>
       <li> <span class="title3">Public safety?</span></br>
-
<span class="texte">As described in the overview, <i>E. calculus</i> should not go out of the lab. Interactions with human body are not envisaged and public should also never be in contact with our modified organism. Every manipulations we proceed are made under great control, in an enclose environment. Each modification we apply to our strains should not be threatening for biodiversity and external organisms. Furthermore, our strains are engineered and should not be able to survive in an external environment.
+
<span class="texte">As described in the overview, E. calculus should not go out of the lab. Interactions with human body are not envisaged and public should also never be in contact with our modified organism. Every manipulations we proceed are made under great control, in an enclose environment. Each modification we apply to our strains should not be threatening for biodiversity and external organisms. Furthermore, our strains are engineered and should not be able to survive in an external environment. <br>
-
<br>If a direct application is find for <i>E. calculus</i> (or just for logic gates we create and test), it will be generally a part of a process in closed reactors, or in controlled environment. We also believe that our system is really safe and could never be an issue for public safety.</span></li>
+
If a direct application is find for E. calculus (or just for logic gates we create and test), it will be generally a part of a process in closed reactors, or in controlled environment. We also believe that our system is really safe and could never be an issue for public safety.
 +
</span></li>
<br>
<br>
       <li> <span class="title3">Environmental safety?</span></br>
       <li> <span class="title3">Environmental safety?</span></br>
-
<span class="texte"><i>E. calculus</i> should also not be deployed in environment and will stay in the lab, at least for instance. Of course, avoiding contaminations and spreading implies a good gesture of biological waste (see the part above “waste gesture”). Furthermore, use of special strain permit us to be sure that none of our modified organisms are spread out in the wild.</span></li>
+
<span class="texte"><i>E. calculus</i>E. calculus should also not be disseminated in the environmentOf course, avoiding contaminations and spreading implies a good gesture of biological waste (see the part above “waste gesture”). Furthermore, use of special strain permits us to be sure that none of our modified organisms are spread out in the wild.</span></li>
     </ul>
     </ul>
Line 249: Line 248:
   <h2 class="title2">Do any of the new BioBrick parts (or devices) that you made this year raise any safety issues?</h2>
   <h2 class="title2">Do any of the new BioBrick parts (or devices) that you made this year raise any safety issues?</h2>
-
   <p class="texte">The only safety issue we can associate with our new Biobricks is researcher exposure to microorganism when testing the parts, but as wrote earlier, all precautions are respected to avoid every problem. Our parts are also tested in different contexts, to assure their full functionality and safety whenever another team wants to use them.</p>
+
   <p class="texte">The only safety issue we can associate with our new Biobricks is researcher exposure to microorganism when testing the parts, but as mentioned earlier, all precautions are respected to avoid any problem. Our parts are also tested in different contexts, to assure their full functionality and safety whenever another team wants to use them.</p>
  <h2 class="title2">Is there a local biosafety group, committee, or review board at your institution?</h2>
  <h2 class="title2">Is there a local biosafety group, committee, or review board at your institution?</h2>
-
   <p class="texte">Our institute disposes of one person who is relevant for security and safety in the lab, but we do not have any group or committee concerning biosafety in general. However, we possess review boards we can consult any time to answer our question about biosafety. In addition, biosafety was evaluated by laboratory responsibles who do not have any restriction letting us work in the lab on this project.</p>
+
   <p class="texte">Our institute disposes of one person who is responsible t for security and safety in the lab, but we do not have any group or committee concerning biosafety in general. However, we possess review boards we can consult any time to answer our question about biosafety. In addition, biosafety was evaluated by the security laboratory officer  who approved the project. </p>
  <h2 class="title2">Do you have any other ideas how to deal with safety issues that could be useful for future iGEM competitions? How could parts, devices and systems be made even safer through biosafety engineering?</h2>
  <h2 class="title2">Do you have any other ideas how to deal with safety issues that could be useful for future iGEM competitions? How could parts, devices and systems be made even safer through biosafety engineering?</h2>
-
   <p class="texte">Our team does not have any local biosafety group or committee, information and documentation about biosafety and condition of application were pretty hard to find. However, we have the luck to work in a laboratory which already got all equipments and protocols to ensure a great Biosafety. It could be a good improvement for future iGEM competitions if iGEM staff could provide us way to ensure that safety is good enough to take part to the competition, like a “safety check-list”, or by putting some “limitations” about the manipulations, telling us what is dangerous or forbidden. (forbidden strains, forbidden modifications, dangerous and “key” manipulations…).
+
   <p class="texte">Our team does not have any local biosafety group or committee, information and documentation about biosafety and condition of application were pretty hard to find. However, we have the luck to work in a laboratory which already got all equipments and protocols to ensure a great Biosafety. It could be a good improvement for future iGEM competitions if iGEM staff could provide us way to ensure that safety is good enough to take part to the competition, like a “safety check-list”, or by putting some “limitations” about the manipulations, telling us what is dangerous or forbidden. (forbidden strains, forbidden modifications, dangerous and “key” manipulations…).  
-
<br>We also focused on the 2012 Paris-Bettencourt iGEM project, named <a href="https://2012.igem.org/Team:Paris_Bettencourt">Bware</a>”, which proposes multiple ways to ensure that new synthetic constructions could never be an issue for health or environment, even if the strain if unfortunately released on the wild. For us, work of team Bettencourt is really important and should potentially be integrated on future iGEM standards and rules.
+
<br>We also focused on the 2012 Paris-Bettencourt iGEM project, named ““<a href="https://2012.igem.org/Team:Paris_Bettencourt">Bware</a>”, which proposes multiple ways to ensure that new synthetic constructions could never be an issue for health or environment, even if the strain is unfortunately released on the wild. For us, work of team Bettencourt is really important and should potentially be integrated on future iGEM standards and rules.  
</p>
</p>

Revision as of 15:03, 3 October 2013

logo


Safety in the Lab

Concerning our institution, safety in INSA Toulouse

INSA Toulouse is a public school, which have some laboratories used for public research. Everybody in the INSA must also follow the French work code, which legislates for respect of environment, workers and public safety. Most of the rules we have to follow are presented in the manual “Manuel de sécurité en laboratoires” (from the WHO), which permits us to know almost everything we have to know about safety with microorganisms we use and products we manipulate. In addition, daily use of Deming wheel allows us to improve the safety system and keep it updated..

Concerning the laboratory

Worker protections
As in every lab, we use conventional protection when manipulating. Every experiment has to be made with gloves and a conventional lab coat, which aimed at protecting the worker and avoiding contaminations. We also wear glasses when they are useful (UV exposition, EtBr using, hot water manipulations, chemicals manipulation…).

Waste gesture

After a formation for chemical waste gesture and biological hazard, we learn how to use different trash cabs as described in the picture. Biological wastes, potentially containing viable microorganism, are autoclaved in a special bag, then discarded by the classical way. Chemical wastes are regrouped and treated every month together with wastes of other labs of the campus.

Devices and Material

In this part, we’ll list all devices we use and how to use them safely:

  • Chemical Storage
    We got separated and dedicated racks for every kind of chemical product we use. As you can see on these pictures, those boxes are key-closed.
  • Ethydium bromure room
    A room is dedicated for using EtBr asthis reactant has been proved to be highly mutagenic and dangerous for user. This room is key-closed. One must wear gloves, glasses and lab coat to enter in. Two special boxes are available to discardspoiled EtBr.
  • Biological safety cabinet
    To avoid external contamination and limit exposure to biological material, we use a Biological safety cabinet (FASTER – Ultrasafe) which is controlled every year. It works according to the principle of laminar flux circulation and filter, in such a way microorganisms are stuck into the cabinet, and external contaminations are impossible. This cabinet is cleaned-up every morning when we arrive and every evening when we leave.
  • Electric burner
    For all manipulations, we also use electric burners, which are as efficient as Bunsen burners (even more), but much more safe than them (this way we limit fire hazards).
  • Fume Cupboards
    To protect the user from volatile chemical compounds while dangerous manipulations, we dispose of two Fume cupboards.
  • Water-bathes
    Use of water-bathes can be dangerous, with exposition of boiling or hot water. We also use special gloves protecting us from projections and steam. The use of water-bathes implies of course wearing glasses and lab coat.
  • P2 Laboratory
    Special care have been taken to manipulate the Chromobacterium violaceum strain which is classified as a class 2 microorganism.

Concerning E. calculus and project

Would E. calculus raise safety issues in terms of:

  • Researcher safety?
    In this project, we are working with biosafety level 1 microorganism (according to World Health Organization (WHO) (Laboratory Biosafety Manual) with Escherichia coli DH5α and DH5-1 strains, which are considered as biologically safe for users. Some of chemical compounds used could be dangerous for health (EtBr, Phenolchloroform…), but as previously described, all precautions are taken to ensure security and safety for all users.

  • Public safety?
    As described in the overview, E. calculus should not go out of the lab. Interactions with human body are not envisaged and public should also never be in contact with our modified organism. Every manipulations we proceed are made under great control, in an enclose environment. Each modification we apply to our strains should not be threatening for biodiversity and external organisms. Furthermore, our strains are engineered and should not be able to survive in an external environment.
    If a direct application is find for E. calculus (or just for logic gates we create and test), it will be generally a part of a process in closed reactors, or in controlled environment. We also believe that our system is really safe and could never be an issue for public safety.

  • Environmental safety?
    E. calculusE. calculus should also not be disseminated in the environmentOf course, avoiding contaminations and spreading implies a good gesture of biological waste (see the part above “waste gesture”). Furthermore, use of special strain permits us to be sure that none of our modified organisms are spread out in the wild.

Do any of the new BioBrick parts (or devices) that you made this year raise any safety issues?

The only safety issue we can associate with our new Biobricks is researcher exposure to microorganism when testing the parts, but as mentioned earlier, all precautions are respected to avoid any problem. Our parts are also tested in different contexts, to assure their full functionality and safety whenever another team wants to use them.

Is there a local biosafety group, committee, or review board at your institution?

Our institute disposes of one person who is responsible t for security and safety in the lab, but we do not have any group or committee concerning biosafety in general. However, we possess review boards we can consult any time to answer our question about biosafety. In addition, biosafety was evaluated by the security laboratory officer who approved the project.

Do you have any other ideas how to deal with safety issues that could be useful for future iGEM competitions? How could parts, devices and systems be made even safer through biosafety engineering?

Our team does not have any local biosafety group or committee, information and documentation about biosafety and condition of application were pretty hard to find. However, we have the luck to work in a laboratory which already got all equipments and protocols to ensure a great Biosafety. It could be a good improvement for future iGEM competitions if iGEM staff could provide us way to ensure that safety is good enough to take part to the competition, like a “safety check-list”, or by putting some “limitations” about the manipulations, telling us what is dangerous or forbidden. (forbidden strains, forbidden modifications, dangerous and “key” manipulations…).
We also focused on the 2012 Paris-Bettencourt iGEM project, named ““Bware”, which proposes multiple ways to ensure that new synthetic constructions could never be an issue for health or environment, even if the strain is unfortunately released on the wild. For us, work of team Bettencourt is really important and should potentially be integrated on future iGEM standards and rules.