(Difference between revisions)

Contents 1 Collaborations 1.1 Edinburgh 1.2 Leeds 1.3 Manchester

Collaborations

Edinburgh

We were able to supply Team Edinburgh with some Bacillus subtilis parameters:

Definition	Value	Source
Cell division rate, growth rate	30-73mins	http://www.ncbi.nlm.nih.gov/pmc/articles/PMC106920/pdf/jb000547.pdf
4.2	4.2	4.2
4.2	4.2	4.2
4.2	4.2	4.2
4.2	4.2	4.2
4.2	4.2	4.2
4.2	4.2	4.2
4.2	4.2	4.2
4.2	4.2	4.2
4.2	4.2	4.2

Leeds

On Friday the 12th of July our team was at UCL for the iGEM U.K. meet up. We delivered a workshop about Mathematical modelling, including teaching the basics of using the rule-based modelling language BioNetGen. We also supplied attendees with all the software needed to produce BioNetGen models on a handy USB. This workshop introduced the Leeds iGEM team to BioNetGen, who went on to use BioNetGen to model the Cpx pathway in their project.

These are the slides from our modelling presentation:

This is the handout from our modelling workshop:

Manchester

We have helped the Manchester team with their 'introduction to modelling', giving ideas on how this could be achieved and producing a tutorial video giving a brief introduction to modelling using BioNetGen.